Evidence map›Paper›PMID 10944215›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2000

Intramolecular control of transcriptional activity by the NK2-specific domain in NK-2 homeodomain proteins.

H Watada, R G Mirmira, J Kalamaras, M S German

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
6.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 100 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Nkx2-5 Regulates the Proliferation and Migration of H9c2 Cells.Medical science monitor : international medical journal of experimental and clinical research · 2020
    Article
  8. Article
  9. Article
  10. Analysis of NKX2-5 in 439 Chinese Patients with Sporadic Atrial Septal Defect.Medical science monitor : international medical journal of experimental and clinical research · 2019
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

H WatadaHormone Research Institute and Department of Medicine, University of California, San Francisco 94143-0534, USA.
R G Mirmira
J Kalamaras
M S German
University of California, San Francisco · US

Funding

DIFFERENTIATION IN THE ENDOCRINE AND EXOCRINE PANCREASR01DK021344 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GERMAN, MICHAEL S · 1986 to 2014
$3.4M
Differentiation in the endocrine and exocrine pancreasR56DK021344 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GERMAN, MICHAEL S · 2009 to 2009
$386k
NIDDK NIH HHS R01 DK021344NIDDK NIH HHS R56 DK021344
6 · The paper itself

Abstract

The developmentally important homeodomain transcription factors of the NK-2 class contain a highly conserved region, the NK2-specific domain (NK2-SD). The function of this domain, however, remains unknown. The primary structure of the NK2-SD suggests that it might function as an accessory DNA-binding domain or as a protein-protein interaction interface. To assess the possibility that the NK2-SD may contribute to DNA-binding specificity, we used a PCR-based approach to identify a consensus DNA-binding sequences for Nkx2.2, an NK-2 family member involved in pancreas and central nervous system development. The consensus sequence (T(C)(T)AAGT(G)(A)(G)(C)TT) is similar to the known binding sequences for other NK-2 homeodomain proteins, but we show that the NK2-SD does not contribute significantly to specific DNA binding to this sequence. To determine whether the NK2-SD contributes to transactivation, we used GAL4-Nkx2. 2 fusion constructs to map a powerful transcriptional activation domain in the C-terminal region beyond the conserved NK2-SD. Interestingly, this C-terminal region functions as a transcriptional activator only in the absence of an intact NK2-SD. The NK2-SD also can mask transactivation from the paired homeodomain transcription factor Pax6, but it has no effect on transcription by itself. These results demonstrate that the NK2-SD functions as an intramolecular regulator of the C-terminal activation domain in Nkx2.2 and support a model in which interactions through the NK2-SD regulate the ability of NK-2-class proteins to activate specific genes during development.

Indexed as

Amino Acid SequenceAnimalsBase SequenceBinding SitesCell LineConsensus SequenceConserved SequenceDNAGenes, ReporterHomeodomain ProteinsMolecular Sequence DataProtein Structure, TertiaryRecombinant Fusion ProteinsRepressor ProteinsResponse ElementsSequence AlignmentDNAHomeodomain ProteinsRecombinant Fusion ProteinsRepressor ProteinsTrans-Activators

Identifiers

PMID10944215
PMCPMC16883
OpenAlexW2070630477

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.