Evidence map›Paper›PMID 10940006›Full record

ArticleJournal of bacteriology2000

Two novel genes induced by hard-surface contact of Colletotrichum gloeosporioides conidia.

Y K Kim, Z M Liu, D Li, P E Kolattukudy

Abstract read
In one paragraph

Article in Journal of bacteriology, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Gene Family Expansion during the Adaptation ofJournal of fungi (Basel, Switzerland) · 2023
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Y K KimDepartment of Biochemistry, Department of Molecular and Cellular Biochemistry, and Neurobiotechnology Center, The Ohio State University, Columbus, Ohio 43210, USA.
Z M Liu
D Li
P E Kolattukudy

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Germinating conidia of many phytopathogenic fungi must differentiate into an infection structure called the appressorium in order to penetrate into their hosts. This differentiation is known to require contact with a hard surface. However, the molecular basis for this requirement is not known. Induction of this differentiation in the avocado pathogen, Colletotrichum gloeosporioides, by chemical signals such as the host's surface wax or the fruit-ripening hormone, ethylene, requires contact of the conidia with a hard surface for about 2 h. To study molecular events triggered by hard-surface contact, we isolated several genes expressed during the early stage of hard-surface treatment by a differential-display method. The genes that encode Colletotrichum hard-surface induced proteins are designated chip genes. In this study, we report the characterization of CHIP2 and CHIP3 genes that would encode proteins with molecular masses of 65 and 64 kDa, respectively, that have no homology to any known proteins. The CHIP2 product would contain a putative nuclear localization signal, a leucine zipper motif, and a heptad repeat region which might dimerize into coiled-coil structure. The CHIP3 product would be a nine-transmembrane-domain-containing protein. RNA blots showed that CHIP2 and CHIP3 are induced by a 2-h hard-surface contact. However, disruption of these genes did not affect the appressorium-forming ability and did not cause a significant decrease in virulence on avocado or tomato fruits suggesting that C. gloeosporioides might have genes functionally redundant to CHIP2 and CHIP3 or that these genes induced by hard-surface contact control processes not directly involved in pathogenesis.

Indexed as

Genes, FungalLeucine ZippersNuclear ProteinsAmino Acid SequenceBase SequenceColletotrichumDNA-Binding ProteinsDNA, FungalEthylenesFungal ProteinsMembrane ProteinsMolecular Sequence DataMutagenesisPlant Growth RegulatorsRNA, FungalSolanum lycopersicumCHIP2 protein, Colletotrichum gloeosporioidesCHIP3 protein, Colletotrichum gloeosporioidesDNA-Binding ProteinsDNA, FungalethyleneEthylenesFungal ProteinsMembrane ProteinsNuclear ProteinsPlant Growth RegulatorsRNA, FungalTranscription Factors

Identifiers

PMID10940006
PMCPMC111342

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.