Evidence map›Paper›PMID 10924455›Full record

ArticleGenetics2000

Genetic analysis of the role of Pol II holoenzyme components in repression by the Cyc8-Tup1 corepressor in yeast.

M Lee, S Chatterjee, K Struhl

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 62 citations in OpenAlex.

  1. Repression by theeLife · 2021
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  14. Glucose signaling in Saccharomyces cerevisiae.Microbiology and molecular biology reviews : MMBR · 2006
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

M LeeDepartments of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, Massachusetts 02115, USA.
S Chatterjee
K Struhl
Harvard University · US

Funding

MOLECULAR MECHANISMS OF GLOBAL REPRESSION IN YEASTR01GM053720 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI STRUHL, KEVIN · 1995 to 2008
$2.9M
NIGMS NIH HHS GM53720
6 · The paper itself

Abstract

The Cyc8-Tup1 corepressor complex is targeted to promoters by pathway-specific DNA-binding repressors, thereby inhibiting the transcription of specific classes of genes. Genetic screens have identified mutations in a variety of Pol II holoenzyme components (Srb8, Srb9, Srb10, Srb11, Sin4, Rgr1, Rox3, and Hrs1) and in the N-terminal tails of histones H3 and H4 that weaken repression by Cyc8-Tup1. Here, we analyze the effect of individual and multiple mutations in many of these components on transcriptional repression of natural promoters that are regulated by Cyc8-Tup1. In all cases tested, individual mutations have a very modest effect on SUC2 RNA levels and no detectable effect on levels of ANB1, MFA2, and RNR2. Furthermore, multiple mutations within the Srb components, between Srbs and Sin4, and between Srbs and histone tails affect Cyc8-Tup1 repression to the same modest extent as the individual mutations. These results argue that the weak effects of the various mutations on repression by Cyc8-Tup1 are not due to redundancy among components of the Pol II machinery, and they argue against a simple redundancy between the holoenzyme and chromatin pathways. In addition, phenotypic analysis indicates that, although Srbs8-11 are indistinguishable with respect to Cyc8-Tup1 repression, the individual Srbs are functionally distinct in other respects. Genetic interactions among srb mutations imply that a balance between the activities of Srb8 + Srb10 and Srb11 is important for normal cell growth.

Indexed as

DNA-Binding ProteinsNuclear ProteinsRepressor ProteinsSaccharomyces cerevisiae ProteinsSuppression, GeneticBacterial ProteinsCell DivisionCyclin-Dependent Kinase 8Cyclin-Dependent KinasesCyclinsFungal ProteinsGenetic Complementation TestHoloenzymesLexA Repressor ProteinMediator ComplexMutationBacterial ProteinsCYC8 protein, S cerevisiaeCyclin-Dependent Kinase 8Cyclin-Dependent KinasesCyclinsDNA-Binding ProteinsFungal ProteinsHoloenzymesLexA Repressor ProteinMediator ComplexNuclear ProteinsRepressor ProteinsRNA Polymerase IISaccharomyces cerevisiae ProteinsSerine EndopeptidasesSSN2 protein, S cerevisiaeSSN3 protein, S cerevisiaeSSN8 protein, S cerevisiaeTranscription FactorsTUP1 protein, S cerevisiae

Identifiers

PMID10924455
PMCPMC1461184
OpenAlexW2151598640

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.