Evidence map›Paper›PMID 10913179›Full record

ArticleMolecular and cellular biology2000

Genetic interactions between TFIIS and the Swi-Snf chromatin-remodeling complex.

J K Davie, C M Kane

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 73 citations in OpenAlex.

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  13. The transcription elongation factor TFIIS is a component of RNA polymerase II preinitiation complexes.Proceedings of the National Academy of Sciences of the United States of America · 2007
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

J K DavieDepartment of Molecular and Cell Biology, University of California, Berkeley, California 94720-3202, USA.
C M Kane
University of California, Berkeley · US

Funding

TRANSCRIPTION ELONGATION FACTORS IN YEASTR01GM054012 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI KANE, CAROLINE M · 1997 to 2000
$234k
NIGMS NIH HHS GM54012
6 · The paper itself

Abstract

The eukaryotic transcript elongation factor TFIIS enables RNA polymerase II to read through blocks to elongation in vitro and interacts genetically with a variety of components of the transcription machinery in vivo. In Saccharomyces cerevisiae, the gene encoding TFIIS (PPR2) is not essential, and disruption strains exhibit only mild phenotypes and an increased sensitivity to 6-azauracil. The nonessential nature of TFIIS encouraged the use of a synthetic lethal screen to elucidate the in vivo roles of TFIIS as well as provide more information on other factors involved in the regulation of transcript elongation. Several genes were identified that are necessary for either cell survival or robust growth when the gene encoding TFIIS has been disrupted. These include UBP3, KEX2, STT4, and SWI2/SNF2. SWI1 and SNF5 disruptions were also synthetically lethal with ppr2Delta, suggesting that the reduced ability to remodel chromatin confers the synthetic phenotype. The synthetic phenotypes show marked osmosensitivity and cytoskeletal defects, including a terminal hyperelongated bud phenotype with the Swi-Snf complex. These results suggest that genes important in osmoregulation, cell membrane synthesis and integrity, and cell division may require the Swi-Snf complex and TFIIS for efficient transcription. The detection of these genetic interactions provides another functional link between the Swi-Snf complex and the elongation machinery.

Indexed as

Nuclear ProteinsTranscriptional Elongation FactorsTranscription Factors, GeneralAdenosine TriphosphatasesChromatinChromosomal Proteins, Non-HistoneDNA-Binding ProteinsFungal ProteinsGene Expression Regulation, FungalSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscriptional ActivationTranscription FactorsAdenosine TriphosphatasesChromatinChromosomal Proteins, Non-HistoneDNA-Binding ProteinsFungal ProteinsNuclear ProteinsSaccharomyces cerevisiae ProteinsSNF2 protein, S cerevisiaeSWI1 protein, S cerevisiaeTranscriptional Elongation FactorsTranscription FactorsTranscription Factors, Generaltranscription factor S-II

Identifiers

PMID10913179
PMCPMC86073
OpenAlexW2103995020

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.