Evidence map›Paper›PMID 10908341›Full record

ArticleNucleic acids research2000

The role of trans-acting factors and DNA-bending in the silencing of human beta-globin gene expression.

L R Drew, D C Tang, P E Berg, G P Rodgers

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.2field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

L R DrewMolecular and Clinical Hematology Branch, National Institute of Diabetes, Digestive and Kidney Diseases, National Institutes of Health, Building 10, Room 9N115, 10 Center Drive, Bethesda, MD 20892, USA.
D C Tang
P E Berg
G P Rodgers
National Institute of Diabetes and Digestive and Kidney Diseases · US

Funding

REPRESSION OF HBS IN SICKLE CELL ANEMIAR01DK053533 · NIDDK · UNIVERSITY OF MARYLAND BALTIMORE · PI BERG, PATRICIA E · 1997 to 2000
$283k
THE MECHANISM OF BETA-GLOBIN GENE SILENCING IN EMBRYONIC-FETAL ERYTHROID CELLSZ01DK027003 · NIDDK · DIABETES, DIGESTIVE, KIDNEY DISEASES · PI RODGERS, GRIFFIN P. · 1998 to 2006
–
NIDDK NIH HHS DK53533
6 · The paper itself

Abstract

The molecular mechanisms which govern the develop-mental specificity of human beta-globin gene transcription have been studied in K562 cells, a human eyrthroleukemia line that expresses minimal beta-globin. Protein-binding analysis reveals that the 5' region contains three elements bound by trans-acting factors, beta-protein 1 (BP1) and beta-protein 2 (BP2). In vitro mutagenesis of each individual element in a beta-globin vector containing chloramphenicol acetyl-transferase (pCAT) followed by transient transfection into K562 cells increased levels of CAT activity 5. 5-fold higher than wild-type (wt) betaCAT, consistent with their silencing role. Mutagenesis of all three elements, however, resulted in activity significantly lower than wt betaCAT. BP1 and BP2 motifs have overlapping binding sites for high mobility group proteins (HMG1+2), DNA-bending factors, shown here to extrinsically bend the beta-globin promoter. Theoretically, mutations in all beta-protein binding sites could affect the binding of HMG1+2 sufficiently to impede DNA-protein and/or protein-protein interactions needed to facilitate constitutive gene expression. Placing two turns of DNA between BP1 and BP2 motifs also increased expression 3-fold, indicative of spatial constraints required for optimal silencing. However, insertion of the HMG1+2 DNA-bending motif (also equivalent to two turns) facilitates beta-silencing by re-establishment of BP1-BP2 proximity. Thus a combination of general DNA-bending and specific transcriptional factors appear to be involved in beta-globin silencing in the embryonic/fetal erythroid stage.

Indexed as

AdultBase SequenceBinding SitesChloramphenicol O-AcetyltransferaseDNADNA-Binding ProteinsGene SilencingGlobinsHumansK562 CellsMutagenesisMutationNucleic Acid ConformationProtein BindingRecombinant Fusion ProteinsRegulatory Sequences, Nucleic AcidChloramphenicol O-AcetyltransferaseDNADNA-Binding ProteinsGlobinsRecombinant Fusion ProteinsTrans-Activators

Identifiers

PMID10908341
PMCPMC102669
OpenAlexW2127390312

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.