Evidence map›Paper›PMID 10908321›Full record

ArticleNucleic acids research2000

Precise arrangement of factor-binding sites is required for murine CD4 promoter function.

S Sarafova, G Siu

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

S SarafovaDepartment of Microbiology and the Integrated Program in Cellular, Molecular and Biophysical Studies, Columbia University, College of Physicians and Surgeons, 701 West 168th Street, New York, NY 10032, USA.
G Siu
Columbia University · US

Funding

CORE--VIROLOGYP30AI042848 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI HO, DAVID D · 1998 to 2002
$4.3M
BIOLOGICAL ANALYSIS OF THE CD4 SILENCERR01AI034925 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SIU, GERALD J · 1996 to 2002
$966k
NIAID NIH HHS P30 AI042848NIAID NIH HHS P30 AI42848NIAID NIH HHS R01 AI034925NIAID NIH HHS R01 AI34925
6 · The paper itself

Abstract

The control of CD4 expression is linked to the signaling events that mediate T-cell development and is directly dependent on the CD4 promoter. The CD4 promoter does not contain functionally redundant sites: all four factor-binding sites must be intact to achieve wild-type activity. Here we demonstrate that the precise position of three factor-binding sites relative to each other is essential for promoter activity, indicating that they function together as an inseparable cassette for assembly of the transcription initiation complex. Small changes in either phasing or distance between any two sites in this cassette leads to complete abrogation of promoter function. In addition, we demonstrate that one of the factors that bind the promoter cassette is not present in CD8 SP T(C) cells. Thus, this factor is a candidate for mediating the relative subclass specificity of CD4 promoter function in activated CD4 SP T(H) cells.

Indexed as

AnimalsBase SequenceBinding SitesCD4 AntigensCell LineDNADNA-Binding ProteinsLuciferasesMiceMutagenesis, Site-DirectedPlasmidsPromoter Regions, GeneticProtein BindingRecombinant Fusion ProteinsCD4 AntigensDNADNA-Binding ProteinsLuciferasesRecombinant Fusion Proteins

Identifiers

PMID10908321
PMCPMC102665
OpenAlexW2097541193

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.