Evidence map›Paper›PMID 10899132›Full record

ArticleThe EMBO journal2000

Role of ribosome recycling factor (RRF) in translational coupling.

Y Inokuchi, A Hirashima, Y Sekine, L Janosi, A Kaji

Open access · greenAbstract read
In one paragraph

Article in The EMBO journal, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 69 citations in OpenAlex.

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  20. Termination codon-dependent translation of partially overlapping ndhC-ndhK transcripts in chloroplasts.Proceedings of the National Academy of Sciences of the United States of America · 2008
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 2 countries.

Y InokuchiDepartment of Bioscience, Teikyo University, Utsunomiya 320-8551, Yakult Pharmaceutical Inc. Co. Tokyo, Institute of Molecular and Cellular Biosciences, University of Tokyo, Tokyo, Japan.
A Hirashima
Y Sekine
L Janosi
A Kaji
University of Pennsylvania · USTeikyo University · JPThe University of Tokyo · JPYakult Honsha (Japan) · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

RNA phage GA coat and lysis protein expression are translationally coupled through an overlapping termination and initiation codon UAAUG. Essential for this coupling are the proximity of the termination codon of the upstream coat gene to the initiation codon of the lysis gene (either a <3 nucleotide separation or physical closeness through a possible hairpin structure) but not the Shine-Dalgarno sequence. This suggests that the ribosomes completing the coat gene translation are exclusively responsible for translation of the lysis gene. Inactivation of ribosome recycling factor (RRF), which normally releases ribosomes at the termination codon, did not influence the expression of the reporter gene fused to the lysis gene. This suggests the possibility that RRF may not release ribosomes from the junction UAAUG. However, RRF is essential for correct ribosomal recognition of the AUG codon as the initiation site for the lysis gene.

Indexed as

Gene Expression Regulation, ViralProtein BiosynthesisAmino Acid SequenceBacteriophagesBase SequenceCapsidCodon, InitiatorCodon, TerminatorEscherichia coliGenes, ReporterGenes, ViralMolecular Sequence DataNucleic Acid ConformationProteinsRecombinant Fusion ProteinsRibosomal ProteinsCodon, InitiatorCodon, TerminatorProteinsRecombinant Fusion ProteinsRibosomal Proteinsribosome releasing factorRNA, BacterialRNA, MessengerViral Proteins

Identifiers

PMID10899132
PMCPMC313962
OpenAlexW1977937037

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.