Evidence map›Paper›PMID 10893255›Full record

ArticleThe Journal of cell biology2000

Reduced mobility of the alternate splicing factor (ASF) through the nucleoplasm and steady state speckle compartments.

M J Kruhlak, M A Lever, W Fischle, E Verdin, D P Bazett-Jones, M J Hendzel

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
7.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 174 citations in OpenAlex.

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  18. Compartmentalization of the nucleus.Trends in cell biology · 2011
    Review
  19. Article
  20. Review

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

M J KruhlakDepartment of Anatomy, Faculty of Medicine, University of Calgary, Calgary, Alberta, Canada T2N 4N1.
M A Lever
W Fischle
E Verdin
D P Bazett-Jones
M J Hendzel
Gladstone Institutes · USUniversity of Alberta · CAUniversity of Calgary · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Compartmentalization of the nucleus is now recognized as an important level of regulation influencing specific nuclear processes. The mechanism of factor organization and the movement of factors in nuclear space have not been fully determined. Splicing factors, for example, have been shown to move in a directed manner as large intact structures from sites of concentration to sites of active transcription, but splicing factors are also thought to exist in a freely diffusible state. In this study, we examined the movement of a splicing factor, ASF, green fluorescent fusion protein (ASF-GFP) using time-lapse microscopy and the technique fluorescence recovery after photobleaching (FRAP). We find that ASF-GFP moves at rates up to 100 times slower than free diffusion when it is associated with speckles and, surprisingly, also when it is dispersed in the nucleoplasm. The mobility of ASF is consistent with frequent but transient interactions with relatively immobile nuclear binding sites. This mobility is slightly increased in the presence of an RNA polymerase II transcription inhibitor and the ASF molecules further enrich in speckles. We propose that the nonrandom organization of splicing factors reflects spatial differences in the concentration of relatively immobile binding sites.

Indexed as

AnimalsBinding SitesBiological TransportCell CompartmentationCell LineCell NucleusDiffusionEnzyme InhibitorsFluorescenceGenes, ReporterGreen Fluorescent ProteinsHumansLuminescent ProteinsMiceMuntjacsNuclear ProteinsEnzyme InhibitorsGreen Fluorescent ProteinsLuminescent ProteinsNuclear ProteinsProtein Kinase InhibitorsRecombinant Fusion ProteinsRNA-Binding ProteinsRNA Polymerase IISerine-Arginine Splicing FactorsTranscription Factors

Identifiers

PMID10893255
PMCPMC2185567
OpenAlexW2070126991

What OpenQuestion holds

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LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.