Evidence map›Paper›PMID 10884416›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2000

Modeling the fission yeast cell cycle: quantized cycle times in wee1- cdc25Delta mutant cells.

A Sveiczer, A Csikasz-Nagy, B Gyorffy, J J Tyson, B Novak

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 122 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Model discrimination in dynamic molecular systems: application to parotid de-differentiation network.Journal of computational biology : a journal of computational molecular cell biology · 2013
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Process-based network decomposition reveals backbone motif structure.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

A SveiczerDepartment of Agricultural Chemical Technology, Budapest University of Technology and Economics, 1521 Budapest, Szt. Gellert ter 4, Hungary. sveiczer.mkt@chem.bme.hu
A Csikasz-Nagy
B Gyorffy
J J Tyson
B Novak
Budapest University of Technology and Economics · HUVirginia Tech · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A detailed mathematical model for the fission yeast mitotic cycle is developed based on positive and negative feedback loops by which Cdc13/Cdc2 kinase activates and inactivates itself. Positive feedbacks are created by Cdc13/Cdc2-dependent phosphorylation of specific substrates: inactivating its negative regulators (Rum1, Ste9 and Wee1/Mik1) and activating its positive regulator (Cdc25). A slow negative feedback loop is turned on during mitosis by activation of Slp1/anaphase-promoting complex (APC), which indirectly re-activates the negative regulators, leading to a drop in Cdc13/Cdc2 activity and exit from mitosis. The model explains how fission yeast cells can exit mitosis in the absence of Ste9 (Cdc13 degradation) and Rum1 (an inhibitor of Cdc13/Cdc2). We also show that, if the positive feedback loops accelerating the G(2)/M transition (through Wee1 and Cdc25) are weak, then cells can reset back to G(2) from early stages of mitosis by premature activation of the negative feedback loop. This resetting can happen more than once, resulting in a quantized distribution of cycle times, as observed experimentally in wee1(-) cdc25Delta mutant cells. Our quantitative description of these quantized cycles demonstrates the utility of mathematical modeling, because these cycles cannot be understood by intuitive arguments alone.

Indexed as

MitosisModels, TheoreticalNuclear ProteinsSchizosaccharomyces pombe ProteinsCDC2 Protein KinaseCell Cycle ProteinsCyclin BFeedbackFungal ProteinsGene DosageProtein-Tyrosine Kinasesras-GRF1SchizosaccharomycesStochastic ProcessesTime FactorsCDC2 Protein KinaseCell Cycle ProteinsCyclin BFungal Proteinsmik1 protein, S pombeNuclear ProteinsProtein-Tyrosine Kinasesras-GRF1Schizosaccharomyces pombe Proteinssrw1 protein, S pombewee1 protein, S pombe

Identifiers

PMID10884416
PMCPMC16636
OpenAlexW1968146089

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.