Evidence map›Paper›PMID 10869433›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2000

A regulatory shortcut between the Snf1 protein kinase and RNA polymerase II holoenzyme.

S Kuchin, I Treich, M Carlson

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 106 citations in OpenAlex.

  1. Article
  2. ATP homeostasis and signaling in plants.Plant communications · 2024
    Review
  3. Advances inJournal of fungi (Basel, Switzerland) · 2023
    Review
  4. Review
  5. Review
  6. Article
  7. Article
  8. C-terminal domain (CTD) phosphatase links Rho GTPase signaling to Pol II CTD phosphorylation in Arabidopsis and yeast.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
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  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

S KuchinDepartment of Genetics and Development and Department of Microbiology, Columbia University, New York, NY 10032, USA.
I Treich
M Carlson
Columbia University · USUniversity of California, Berkeley · US

Funding

Cancer Research Training Program: From Molecular Mechanisms to Therapeutic StrategiesT32CA009109 · NCI · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI Andrew Carl Dudley, Melanie R Rutkowski · 1985 to 2026
$13.9M
SNF/SWI COMPLEX AND TRANSCRIPTIONAL ACTIVATIONR01GM047259 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI CARLSON, MARIAN B · 1992 to 2004
$1.3M
MAMMALIAN GENOME ORGANIZATION AND GENE AMPLIFICATIONR01CA052559 · NCI · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI HAMLIN, JOYCE L · 1990 to 1997
–
NCI NIH HHS R01 CA52559NCI NIH HHS T32CA 09109NIGMS NIH HHS R01 GM047259
6 · The paper itself

Abstract

RNA polymerase II holoenzymes respond to activators and repressors that are regulated by signaling pathways. Here we present evidence for a "shortcut" mechanism in which the Snf1 protein kinase of the glucose signaling pathway directly regulates transcription by the yeast holoenzyme. In response to glucose limitation, the Snf1 kinase stimulates transcription by holoenzyme that has been artificially recruited to a reporter by a LexA fusion to a holoenzyme component. We show that Snf1 interacts physically with the Srb/mediator proteins of the holoenzyme in both two-hybrid and coimmunoprecipitation assays. We also show that a catalytically hyperactive Snf1, when bound to a promoter as a LexA fusion protein, activates transcription in a glucose-regulated manner; moreover, this activation depends on the integrity of the Srb/mediator complex. These results suggest that direct regulatory interactions between signal transduction pathways and RNA polymerase II holoenzyme provide a mechanism for transcriptional control in response to important signals.

Indexed as

Saccharomyces cerevisiae ProteinsTrans-ActivatorsBacterial ProteinsCyclin-Dependent Kinase 8Cyclin-Dependent KinasesCyclinsFungal ProteinsGene Expression Regulation, FungalGlucoseHoloenzymesLexA Repressor ProteinMediator ComplexModels, GeneticPrecipitin TestsPromoter Regions, GeneticProtein BindingBacterial ProteinsCyclin-Dependent Kinase 8Cyclin-Dependent KinasesCyclinsFungal ProteinsGlucoseHoloenzymesLexA Repressor ProteinMediator ComplexProtein Serine-Threonine KinasesRNA Polymerase IISaccharomyces cerevisiae ProteinsSerine EndopeptidasesSIN4 protein, S cerevisiaeSNF1-related protein kinasesSSN3 protein, S cerevisiaeSSN8 protein, S cerevisiaeTrans-ActivatorsTranscription Factors

Identifiers

PMID10869433
PMCPMC16645
OpenAlexW1973608892

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.