ArticleProceedings of the National Academy of Sciences of the United States of America2000
Transposon diversity in Arabidopsis thaliana.
Article in Proceedings of the National Academy of Sciences of the United States of America, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 104 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
104 citing papers in PubMed, 224 citations in OpenAlex.
- Transposon-Associated Small RNAs Involved in Plant Defense in Poplar.Plants (Basel, Switzerland) · 2025Article
- The Genomic Shock Hypothesis: Genetic and Epigenetic Alterations of Transposable Elements after Interspecific Hybridization in Plants.Epigenomes · 2023Review
- Arms race between anti-silencing and RdDM in noncoding regions of transposable elements.EMBO reports · 2023Article
- Regulatory mechanism of a heat-activated retrotransposon by DDR complex inFrontiers in plant science · 2022Article
- GmRAV confers ecological adaptation through photoperiod control of flowering time and maturity in soybean.Plant physiology · 2021Article
- Review
- Prediction of regulatory long intergenic non-coding RNAs acting in trans through base-pairing interactions.BMC genomics · 2019Article
- Helitron distribution in Brassicaceae and whole Genome Helitron density as a character for distinguishing plant species.BMC bioinformatics · 2019Article
- Opportunities and limitations of reduced representation bisulfite sequencing in plant ecological epigenomics.The New phytologist · 2019Review
- Evolution ofMobile DNA · 2019Article
- Evolution of sequence-specific anti-silencing systems in Arabidopsis.Nature communications · 2017Article
- Comparative epigenomics in the Brassicaceae reveals two evolutionarily conserved modes of PRC2-mediated gene regulation.Genome biology · 2017Article
- Profuse evolutionary diversification and speciation on volcanic islands: transposon instability and amplification bursts explain the genetic paradox.Biology direct · 2016Article
- Phylogenetic and Genomic Analyses Resolve the Origin of Important Plant Genes Derived from Transposable Elements.Molecular biology and evolution · 2016Article
- Creating Order from Chaos: Epigenome Dynamics in Plants with Complex Genomes.The Plant cell · 2016Review
- MuTAnT: a family of Mutator-like transposable elements targeting TA microsatellites in Medicago truncatula.Genetica · 2015Article
- Reproductive Mode and the Evolution of Genome Size and Structure in Caenorhabditis Nematodes.PLoS genetics · 2015Article
- Global DNA cytosine methylation as an evolving trait: phylogenetic signal and correlated evolution with genome size in angiosperms.Frontiers in genetics · 2015Article
- Genomic localization of AtRE1 and AtRE2, copia-type retrotransposons, in natural variants of Arabidopsis thaliana.Molecular genetics and genomics : MGG · 2014Article
- The structure and retrotransposition mechanism of LTR-retrotransposons in the asexual yeast Candida albicans.Virulence · 2014Review
44 more citing papers are in PubMed but not listed here.
Corrections and comments
- Erratum issued
Authors and funding
4 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Recent availability of extensive genome sequence information offers new opportunities to analyze genome organization, including transposon diversity and accumulation, at a level of resolution that was previously unattainable. In this report, we used sequence similarity search and analysis protocols to perform a fine-scale analysis of a large sample ( approximately 17.2 Mb) of the Arabidopsis thaliana (Columbia) genome for transposons. Consistent with previous studies, we report that the A. thaliana genome harbors diverse representatives of most known superfamilies of transposons. However, our survey reveals a higher density of transposons of which over one-fourth could be classified into a single novel transposon family designated as Basho, which appears unrelated to any previously known superfamily. We have also identified putative transposase-coding ORFs for miniature inverted-repeat transposable elements (MITEs), providing clues into the mechanism of mobility and origins of the most abundant transposons associated with plant genes. In addition, we provide evidence that most mined transposons have a clear distribution preference for A + T-rich sequences and show that structural variation for many mined transposons is partly due to interelement recombination. Taken together, these findings further underscore the complexity of transposons within the compact genome of A. thaliana.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.