Evidence map›Paper›PMID 10860957›Full record

ReviewProceedings of the National Academy of Sciences of the United States of America2000

Dynamic evolution of plant mitochondrial genomes: mobile genes and introns and highly variable mutation rates.

J D Palmer, K L Adams, Y Cho, C L Parkinson, Y L Qiu, K Song

Open access · greenAbstract readReview
In one paragraph

Review in Proceedings of the National Academy of Sciences of the United States of America, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 155 papers.

0numbers the graph read from it
0cells of the map it votes in
155citing papers in PubMed
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

155 citing papers in PubMed, 371 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. RhoMitoAnnotator and Polypods, Bioinformatics Tools for theInternational journal of molecular sciences · 2026
    Article
  5. Article
  6. Article
  7. The First Complete Mitochondrial Genome ofCurrent issues in molecular biology · 2026
    Article
  8. Article
  9. Article
  10. Article
  11. Comparative mitochondrial genomics of cultivatedFrontiers in plant science · 2026
    Article
  12. Article
  13. Article
  14. Article
  15. Mitochondrial Genome Analysis ofEcology and evolution · 2025
    Article
  16. Article
  17. Characterization of the Mitochondrial Genome ofPlants (Basel, Switzerland) · 2025
    Article
  18. Article
  19. Article
  20. Article

95 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

J D PalmerDepartment of Biology, Indiana University, Bloomington, IN 47405, USA. jpalmer@bio.indiana.edu
K L Adams
Y Cho
C L Parkinson
Y L Qiu
K Song
Indiana University Bloomington · US

Funding

TRANSFER OF ORGANELLE GENES TO THE NUCLEUSR01GM035087 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PALMER, JEFFREY D · 1985 to 2004
$1.8M
INTRON EVOLUTION IN LAND PLANT ORGANELLAR GENOMEF32GM017923 · NIGMS · INDIANA UNIVERSITY BLOOMINGTON · PI QIU, YIN-LONG · 1995 to 1996
–
ACCELERATED EVOLUTION OF PLANT MITOCHONDRIAL DNAF32GM019225 · NIGMS · INDIANA UNIVERSITY BLOOMINGTON · PI PARKINSON, CHRISTOPHER L · 1998 to 1999
–
NIGMS NIH HHS F32 GM017923NIGMS NIH HHS F32 GM019225NIGMS NIH HHS GM-17923NIGMS NIH HHS GM-19225NIGMS NIH HHS GM-35087NIGMS NIH HHS R01 GM035087
6 · The paper itself

Abstract

We summarize our recent studies showing that angiosperm mitochondrial (mt) genomes have experienced remarkably high rates of gene loss and concomitant transfer to the nucleus and of intron acquisition by horizontal transfer. Moreover, we find substantial lineage-specific variation in rates of these structural mutations and also point mutations. These findings mostly arise from a Southern blot survey of gene and intron distribution in 281 diverse angiosperms. These blots reveal numerous losses of mt ribosomal protein genes but, with one exception, only rare loss of respiratory genes. Some lineages of angiosperms have kept all of their mt ribosomal protein genes whereas others have lost most of them. These many losses appear to reflect remarkably high (and variable) rates of functional transfer of mt ribosomal protein genes to the nucleus in angiosperms. The recent transfer of cox2 to the nucleus in legumes provides both an example of interorganellar gene transfer in action and a starting point for discussion of the roles of mechanistic and selective forces in determining the distribution of genetic labor between organellar and nuclear genomes. Plant mt genomes also acquire sequences by horizontal transfer. A striking example of this is a homing group I intron in the mt cox1 gene. This extraordinarily invasive mobile element has probably been acquired over 1,000 times separately during angiosperm evolution via a recent wave of cross-species horizontal transfers. Finally, whereas all previously examined angiosperm mtDNAs have low rates of synonymous substitutions, mtDNAs of two distantly related angiosperms have highly accelerated substitution rates.

Indexed as

Biological EvolutionGenome, PlantDNA, MitochondrialGenes, PlantInterspersed Repetitive SequencesIntronsMutationPlantsDNA, Mitochondrial

Identifiers

PMID10860957
PMCPMC34370
OpenAlexW2157843019

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.