Evidence map›Paper›PMID 10852959›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2000

A M(r) 34,000 proinflammatory outer membrane protein (oipA) of Helicobacter pylori.

Y Yamaoka, D H Kwon, D Y Graham

Erratum issuedAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 204 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
204citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

204 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Annals of medicine · 2026
    Review
  4. Microbiology and molecular biology reviews : MMBR · 2026
    Review
  5. Article
  6. Review
  7. Article
  8. Review
  9. Review
  10. The Effect ofPathogens (Basel, Switzerland) · 2025
    Article
  11. Frontiers in microbiology · 2025
    Review
  12. Article
  13. Article
  14. Pathogens (Basel, Switzerland) · 2024
    Review
  15. Implications of lncRNAs inFrontiers in cellular and infection microbiology · 2024
    Review
  16. Article
  17. Article
  18. Microorganisms · 2023
    Review
  19. Pathogenomics of Helicobacter pylori.Current topics in microbiology and immunology · 2023
    Review
  20. Gastric Stem Cell Biology and Helicobacter pylori Infection.Current topics in microbiology and immunology · 2023
    Article

144 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

3 authors.

Y YamaokaDepartment of Medicine, Veterans Affairs Medical Center and Baylor College of Medicine, 2002 Holcombe Boulevard, Houston, TX 77030, USA.
D H Kwon
D Y Graham

Funding

IDENT OF H PYLORI VIRUL FACTORS IN ETHNIC POPULATIONSR01DK053659 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI GRAHAM, DAVID Y · 1997 to 2000
$149k
NIDDK NIH HHS DK53659
6 · The paper itself

Abstract

The complete genome sequence revealed a family of 32 outer membrane proteins (OMPs) in Helicobacter pylori. We examined the effect of four OMPs (HP0638, HP0796, HP1501, and babA2) on the production of the proinflammatory cytokine, IL-8. Mutants of the four OMPs, as well as cagE and galE from H. pylori from the U.S. and Japan, were constructed by inserting a chloramphenicol-resistant cassette into the gene. Twenty-two pairs of parental and mutant H. pylori strains, as well as 160 clinical isolates (80 from Japanese and 80 from U.S.), were cocultured with gastric cancer cell lines. IL-8 production in the supernatant and adhesion was assayed by ELISA. HP0796, HP1501, babA2, and galE gene knockouts had no significant effect on IL-8 production. Knockout of the HP0638 gene in 81% of cag-positive strains reduced IL-8 production approximately 50%. The three cag-positive strains in which IL-8 levels were unchanged by HP0638 knockout had five or seven CT dinucleotide repeats in the 5' region, resulting in a frame shift and truncation. Strains with naturally inactive HP0638 gene were all from the U.S.; Japanese strains were always "on" and thus, on average, may be more virulent. Although cag-negative isolates produced a limited IL-8 response, cag-negative strains that contained a functional HP0638 gene produced more than 3-fold greater IL-8 than cag-negative nonfunctional HP0638 strains. We hypothesize that functional HP0638 gene may be an important virulence factor in relation to the risk of clinically significant outcomes of H. pylori infection. We denote HP0638 gene as outer inflammatory protein (oipA).

Indexed as

Amino Acid SequenceBacterial Outer Membrane ProteinsBase SequenceGenes, BacterialHelicobacter pyloriHumansInflammationMolecular Sequence DataMutationTumor Cells, CulturedVirulenceBacterial Outer Membrane Proteins

Identifiers

PMID10852959
PMCPMC16580

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.