Evidence map›Paper›PMID 10850795›Full record

ArticleProtein science : a publication of the Protein Society2000

Binding of Zn2+ to a Ca2+ loop allosterically attenuates the activity of factor VIIa and reduces its affinity for tissue factor.

L C Petersen, O H Olsen, L S Nielsen, P O Freskgård, E Persson

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.5field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Strategies for Therapeutic Amelioration of Aberrant Plasma ZnInternational journal of molecular sciences · 2022
    Review
  3. Review
  4. Influence of zinc on glycosaminoglycan neutralisation during coagulation.Metallomics : integrated biometal science · 2018
    Review
  5. Review
  6. Dietary zinc depletion and repletion affects plasma proteins: an analysis of the plasma proteome.Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2013
    Article
  7. Structural biology of factor VIIa/tissue factor initiated coagulation.Frontiers in bioscience (Landmark edition) · 2012
    Review
  8. Review
  9. Article
  10. Article
  11. Ligand binding and allostery can emerge simultaneously.Protein science : a publication of the Protein Society · 2007
    Article
  12. Article
  13. Rational design of coagulation factor VIIa variants with substantially increased intrinsic activity.Proceedings of the National Academy of Sciences of the United States of America · 2001
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

L C PetersenTissue Factor/Factor VII Research, Novo Nordisk A/S, Måløv, Denmark. lcp@novo.dk
O H Olsen
L S Nielsen
P O Freskgård
E Persson
Novo Nordisk (Denmark) · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The protease domain of coagulation factor VIIa (FVIIa) is homologous to trypsin with a similar active site architecture. The catalytic function of FVIIa is regulated by allosteric modulations induced by binding of divalent metal ions and the cofactor tissue factor (TF). To further elucidate the mechanisms behind these transformations, the effects of Zn2+ binding to FVIIa in the free form and in complex with TF were investigated. Equilibrium dialysis suggested that two Zn2+ bind with high affinity to FVIIa outside the N-terminal gamma-carboxyglutamic acid (Gla) domain. Binding of Zn2+ to FVIIa, which was influenced by the presence of Ca2+, resulted in decreased amidolytic activity and slightly reduced affinity for TF. After binding to TF, FVIIa was less susceptible to zinc inhibition. Alanine substitutions for either of two histidine residues unique for FVIIa, His216, and His257, produced FVIIa variants with decreased sensitivity to Zn2+ inhibition. A search for putative Zn2+ binding sites in the crystal structure of the FVIIa protease domain was performed by Grid calculations. We identified a pair of Zn2+ binding sites in the Glu210-Glu220 Ca2+ binding loop adjacent to the so-called activation domain canonical to serine proteases. Based on our results, we propose a model that describes the conformational changes underlying the Zn2+-mediated allosteric down-regulation of FVIIa's activity.

Indexed as

AlanineAllosteric SiteAmino Acid Chloromethyl KetonesBinding SitesCalciumCatalytic DomainDose-Response Relationship, DrugFactor VIIaHistidineHumansIonsKineticsModels, MolecularProtein BindingProtein ConformationProtein Structure, TertiaryAlanineAmino Acid Chloromethyl KetonesCalciumFactor VIIaHistidineIonsphenylalanyl-phenylalanyl-arginine chloromethyl ketoneRecombinant ProteinsThromboplastinZinc

Identifiers

PMID10850795
PMCPMC2144641
OpenAlexW2086722675

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.