Evidence map›Paper›PMID 10848607›Full record

ArticleMolecular and cellular biology2000

Assembly of a functional beta interferon enhanceosome is dependent on ATF-2-c-jun heterodimer orientation.

J V Falvo, B S Parekh, C H Lin, E Fraenkel, T Maniatis

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 137 citations in OpenAlex.

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  6. Strand asymmetries across genomic processes.Computational and structural biotechnology journal · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

J V FalvoDepartment of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA.
B S Parekh
C H Lin
E Fraenkel
T Maniatis
Harvard University · US

Funding

Innate Immunity: Signal Transduction and Interferon Gene RegulationR01AI020642 · NIAID · HARVARD UNIVERSITY · PI MANIATIS, THOMAS P · 1985 to 2010
$5.3M
HUMAN B-INTERFERON GENE REGULATIONR37AI020642 · NIAID · HARVARD UNIVERSITY · PI MANIATIS, THOMAS P · 1987 to 1996
–
NIAID NIH HHS AI20642NIAID NIH HHS R01 AI020642
6 · The paper itself

Abstract

Heterodimeric transcription factors, including the basic region-leucine zipper (bZIP) protein ATF-2-c-jun, are well-characterized components of an enhanceosome that mediates virus induction of the human beta interferon (IFN-beta) gene. Here we report that within the IFN-beta enhanceosome the ATF-2-c-jun heterodimer binds in a specific orientation, which is required for assembly of a complex between ATF-2-c-jun and interferon regulatory factor 3 (IRF-3). We demonstrate that correct orientation of the ATF-2-c-jun binding site is required for virus induction of the IFN-beta gene and for IRF-3-dependent activation of a composite ATF-2- c-jun-IRF site in the IFN-beta promoter. We also show that in vitro the DNA-bound ATF-2-c-jun heterodimer adopts a fixed orientation upon the binding of IRF-3 at an adjacent site in the IFN-beta enhancer and that the DNA-binding domain of IRF-3 is sufficient to mediate this effect. In addition, we show that the DNA-binding domain of ATF-2 is necessary and sufficient for selective protein-protein interactions with IRF-3. Strikingly, in vivo chromatin immunoprecipitation experiments with IFN-beta reporter constructs reveal that recruitment of IRF-3 to the IFN-beta promoter upon virus infection is dependent on the orientation of the ATF-2-c-jun heterodimer binding site. These observations demonstrate functional and physical cooperativity between the bZIP and IRF transcription factor families and illustrate the critical role of heterodimeric transcription factors in formation of the IFN-beta enhanceosome.

Indexed as

Repressor ProteinsActivating Transcription Factor 2Amino Acid SequenceBase SequenceBinding SitesCross-Linking ReagentsCyclic AMP Response Element-Binding ProteinDimerizationDNADNA-Binding ProteinsEnhancer Elements, GeneticGlutathione TransferaseHeLa CellsHumansInterferon-betaInterferon Regulatory Factor-1Activating Transcription Factor 2ATF2 protein, humanCross-Linking ReagentsCyclic AMP Response Element-Binding ProteinDNADNA-Binding ProteinsGlutathione TransferaseInterferon-betaInterferon Regulatory Factor-1Interferon Regulatory Factor-2Interferon Regulatory Factor-3IRF1 protein, humanIRF2 protein, humanIRF3 protein, humanPhosphoproteinsProto-Oncogene Proteins c-junRecombinant ProteinsRepressor ProteinsTranscription Factors

Identifiers

PMID10848607
PMCPMC85927
OpenAlexW2035209826

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.