Evidence map›Paper›PMID 10844669›Full record

ArticleMolecular microbiology2000

PAS domain residues involved in signal transduction by the Aer redox sensor of Escherichia coli.

A Repik, A Rebbapragada, M S Johnson, J O Haznedar, I B Zhulin, B L Taylor

Open access · greenAbstract read
In one paragraph

Article in Molecular microbiology, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 117 citations in OpenAlex.

  1. Signaling mechanism of the transmembrane energy receptor Aer.bioRxiv : the preprint server for biology · 2026
    Article
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  4. ThemBio · 2025
    Article
  5. Characterization ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2023
    Article
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  8. Review
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  16. Bacterial chemoreceptors and chemoeffectors.Cellular and molecular life sciences : CMLS · 2015
    Review
  17. Article
  18. Article
  19. Article
  20. Article

6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

A RepikDepartment of Microbiology and Molecular Genetics, School of Medicine, Loma Linda University, Loma Linda, California, 92350 USA.
A Rebbapragada
M S Johnson
J O Haznedar
I B Zhulin
B L Taylor
Loma Linda University · US

Funding

SENSORY TRANSDUCTION IN BACTERIAR01GM029481 · NIGMS · LOMA LINDA UNIVERSITY · PI TAYLOR, BARRY L · 1985 to 2011
$2.9M
NIGMS NIH HHS GM29481NIGMS NIH HHS R01 GM029481NIGMS NIH HHS R01 GM029481-15
6 · The paper itself

Abstract

PAS domains sense oxygen, redox potential and light, and are implicated in behaviour, circadian rhythmicity, development and metabolic regulation. Although PAS domains are widespread in archaea, bacteria and eukaryota, the mechanism of signal transduction has been elucidated only for the bacterial photo sensor PYP and oxygen sensor FixL. We investigated the signalling mechanism in the PAS domain of Aer, the redox potential sensor and aerotaxis transducer in Escherichia coli. Forty-two residues in Aer were substituted using cysteine-replacement mutagenesis. Eight mutations resulted in a null phenotype for aerotaxis, the behavioural response to oxygen. Four of them also led to the loss of the non-covalently bound FAD cofactor. Three mutant Aer proteins, N34C, F66C and N85C, transmitted a constant signal-on bias. One mutation, Y111C, inverted signalling by the transducer so that positive stimuli produced negative signals and vice versa. Residues critical for signalling were mapped onto a three-dimensional model of the Aer PAS domain, and an FAD-binding site and 'active site' for signal transduction are proposed.

Indexed as

Escherichia coli ProteinsSignal TransductionAmino Acid SequenceCarrier ProteinsEscherichia coliFlavin-Adenine DinucleotideIntercellular Signaling Peptides and ProteinsMolecular Sequence DataMutagenesisOxidation-ReductionProtein Structure, TertiaryAer protein, E coliCarrier ProteinsEscherichia coli ProteinsFlavin-Adenine DinucleotideIntercellular Signaling Peptides and Proteins

Identifiers

PMID10844669
PMCPMC1805630
OpenAlexW2015417263

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.