ArticleGenetics2000
Nucleotide variation at the CHALCONE ISOMERASE locus in Arabidopsis thaliana.
Article in Genetics, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.
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Who cites it
35 citing papers in PubMed, 104 citations in OpenAlex.
- The CLV-WUS Stem Cell Signaling Pathway: A Roadmap to Crop Yield Optimization.Plants (Basel, Switzerland) · 2018Review
- Insertions/Deletions-Associated Nucleotide Polymorphism inFrontiers in plant science · 2016Article
- Sequence variation, differential expression, and divergent evolution in starch-related genes among accessions of Arabidopsis thaliana.Plant molecular biology · 2015Article
- Structure, expression profile and phylogenetic inference of chalcone isomerase-like genes from the narrow-leafed lupin (Lupinus angustifolius L.) genome.Frontiers in plant science · 2015Article
- Article
- The timetable for allopolyploidy in flowering plants.Annals of botany · 2013Review
- Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution.Proceedings of the National Academy of Sciences of the United States of America · 2011Article
- Gene transposition causing natural variation for growth in Arabidopsis thaliana.PLoS genetics · 2010Article
- Low levels of polymorphism in genes that control the activation of defense response in Arabidopsis thaliana.Genetics · 2008Article
- Population structure and its effects on patterns of nucleotide polymorphism in teosinte (Zea mays ssp. parviglumis).Genetics · 2007Article
- Evolution and genetic differentiation among relatives of Arabidopsis thaliana.Proceedings of the National Academy of Sciences of the United States of America · 2007Article
- Unique nucleotide polymorphism of ankyrin gene cluster in Arabidopsis.Journal of genetics · 2007Article
- Testing for effects of recombination rate on nucleotide diversity in natural populations of Arabidopsis lyrata.Genetics · 2006Article
- A genome-wide survey of R gene polymorphisms in Arabidopsis.The Plant cell · 2006Article
- Article
- High-diversity genes in the Arabidopsis genome.Genetics · 2005Article
- Comparative genome analyses of Arabidopsis spp.: inferring chromosomal rearrangement events in the evolutionary history of A. thaliana.Genome research · 2005Article
- A multilocus sequence survey in Arabidopsis thaliana reveals a genome-wide departure from a neutral model of DNA sequence polymorphism.Genetics · 2005Article
- Single nucleotide polymorphism, haplotype diversity and recombination in the Isa gene of barley.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2004Article
- National Science Foundation-sponsored workshop report. Draft plan for soybean genomics.Plant physiology · 2004Article
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Authors and funding
2 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
An approximately 1.9-kb region encompassing the CHI gene, which encodes chalcone isomerase, was sequenced in 24 worldwide ecotypes of Arabidopsis thaliana (L.) Heynh. and in 1 ecotype of A. lyrata ssp. petraea. There was no evidence for dimorphism at the CHI region. A minimum of three recombination events was inferred in the history of the sampled ecotypes of the highly selfing A. thaliana. The estimated nucleotide diversity theta(TOTAL) = 0.004, theta(SIL) = 0. 005 was on the lower part of the range of the corresponding estimates for other gene regions. The skewness of the frequency spectrum toward an excess of low-frequency polymorphisms, together with the bell-shaped distribution of pairwise nucleotide differences at CHI, suggests that A. thaliana has recently experienced a rapid population growth. Although this pattern could also be explained by a recent selective sweep at the studied region, results from the other studied loci and from an AFLP survey seem to support the expansion hypothesis. Comparison of silent polymorphism and divergence at the CHI region and at the Adh1 and ChiA revealed in some cases a significant deviation of the direct relationship predicted by the neutral theory, which would be compatible with balancing selection acting at the latter regions.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.