Evidence map›Paper›PMID 10825201›Full record

ArticleMolecular and cellular biology2000

The CaaX proteases, Afc1p and Rce1p, have overlapping but distinct substrate specificities.

C E Trueblood, V L Boyartchuk, E A Picologlou, D Rozema, C D Poulter, J Rine

Abstract read
In one paragraph

Article in Molecular and cellular biology, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed.

  1. Article
  2. Comprehensive analysis of CXXX sequence space reveals thatbioRxiv : the preprint server for biology · 2024
    Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Protein Prenylation in Plant Stress Responses.Molecules (Basel, Switzerland) · 2019
    Review
  10. Rce1: mechanism and inhibition.Critical reviews in biochemistry and molecular biology · 2018
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

C E TruebloodMolecular and Cell Biology Department, University of California, Berkeley, California 94720, USA.
V L Boyartchuk
E A Picologlou
D Rozema
C D Poulter
J Rine

Funding

TERPENE CONDENSATION REACTIONSR01GM021328 · NIGMS · UNIVERSITY OF UTAH · PI POULTER, CHARLES DALE · 1985 to 2013
$3.6M
TERPENE CONDENSATION REACTIONSR37GM021328 · NIGMS · UNIVERSITY OF UTAH · PI POULTER, CHARLES DALE · 1995 to 2004
$2.3M
REGULATION OF THE STEROL BIOSYNTHETIC PATHWAY IN YEASTR01GM035827 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI RINE, JASPER D · 1986 to 2005
$2.0M
Terpene Condensation ReactionsR56GM021328 · NIGMS · UNIVERSITY OF UTAH · PI POULTER, CHARLES DALE · 2009 to 2009
$473k
NIGMS NIH HHS GM 21328NIGMS NIH HHS GM35827NIGMS NIH HHS R01 GM021328NIGMS NIH HHS R01 GM035827NIGMS NIH HHS R37 GM021328NIGMS NIH HHS R56 GM021328
6 · The paper itself

Abstract

Many proteins that contain a carboxyl-terminal CaaX sequence motif, including Ras and yeast a-factor, undergo a series of sequential posttranslational processing steps. Following the initial prenylation of the cysteine, the three C-terminal amino acids are proteolytically removed, and the newly formed prenylcysteine is carboxymethylated. The specific amino acids that comprise the CaaX sequence influence whether the protein can be prenylated and proteolyzed. In this study, we evaluated processing of a-factor variants with all possible single amino acid substitutions at either the a(1), the a(2), or the X position of the a-factor Ca(1)a(2)X sequence, CVIA. The substrate specificity of the two known yeast CaaX proteases, Afc1p and Rce1p, was investigated in vivo. Both Afc1p and Rce1p were able to proteolyze a-factor with A, V, L, I, C, or M at the a(1) position, V, L, I, C, or M at the a(2) position, or any amino acid at the X position that was acceptable for prenylation of the cysteine. Eight additional a-factor variants with a(1) substitutions were proteolyzed by Rce1p but not by Afc1p. In contrast, Afc1p was able to proteolyze additional a-factor variants that Rce1p may not be able to proteolyze. In vitro assays indicated that farnesylation was compromised or undetectable for 11 a-factor variants that produced no detectable halo in the wild-type AFC1 RCE1 strain. The isolation of mutations in RCE1 that improved proteolysis of a-factor-CAMQ, indicated that amino acid substitutions E139K, F189L, and Q201R in Rce1p affected its substrate specificity.

Indexed as

Arabidopsis ProteinsSaccharomyces cerevisiae ProteinsAmino Acid SequenceAmino Acid SubstitutionBinding SitesEndopeptidasesMetalloendopeptidasesMolecular Sequence DataMutationPlant ProteinsProprotein ConvertasesProtein KinasesSaccharomyces cerevisiaeSubstrate SpecificityAFC1 protein, ArabidopsisArabidopsis ProteinsEndopeptidasesMetalloendopeptidasesPlant ProteinsProprotein ConvertasesProtein KinasesRCE1 protein, S cerevisiaeSaccharomyces cerevisiae Proteins

Identifiers

PMID10825201
PMCPMC85805

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.