Evidence map›Paper›PMID 10823954›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2000

The complete unique long sequence and the overall genomic organization of the GA strain of Marek's disease virus.

L F Lee, P Wu, D Sui, D Ren, J Kamil, H J Kung, R L Witter

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 87 papers.

0numbers the graph read from it
0cells of the map it votes in
87citing papers in PubMed
9.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

87 citing papers in PubMed, 213 citations in OpenAlex.

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27 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

L F LeeUnited States Department of Agriculture-Agricultural Research Service, Avian Disease and Oncology Laboratory, East Lansing, MI 48823, USA. leelu@pilot.Msu.edu
P Wu
D Sui
D Ren
J Kamil
H J Kung
R L Witter
Agricultural Research Service · USUnited States Department of Agriculture · USUniversity of California, Davis · US

Funding

ONCOGENE ACTIVATION IN BANDT LYMPHOMAR37CA046613 · NCI · UNIVERSITY OF CALIFORNIA DAVIS · PI KUNG, HSING-JIEN · 1993 to 2000
$321k
ONCOGENE ACTIVATION IN AVIAN B &T LYMPHOMAR01CA046613 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI KUNG, HSING-JIEN · 1988 to 1992
–
NCI NIH HHS CA 46613
6 · The paper itself

Abstract

We have determined the DNA sequence of the unique long (UL) region and the repeat long (RL) region in the genome of serotype 1 GA strain of Marek's disease virus (MDV), a member of the alpha-herpesvirus family. With this information, the complete nucleotide sequence of GA-MDV is now known. The entire GA-MDV genome is predicted to be about 174 kbp in size, with an organization of TRL-UL-IRL-IRS-US-TRS, typical of a alpha-herpesvirus. The UL sequence contains 113,508 bp and has a base composition of 41.7% G + C. A total of 67 ORFs were identified completely within the UL region, among which 55 are homologous to genes encoded by herpes simplex virus-1. Twelve of them are unique with presently unknown functions. The sequence of RL reported here together with those published earlier reveal the major structural features of the RL. Virtually all of the ORFs encoded by RL are specific to serotype I of MDV. These ORFs are likely to contribute to some of the unique biological properties of MDV. Among the proteins encoded by MDV-specific ORFs are Meq, a jun/fos family of transcriptional factor implicated in transformation and latency, virus-encoded interleukin-8, a CXC chemokine, and pp38 and pp24, two phosphoproteins with undefined functions. There is also a putative lipase gene (LORF2) that has homologies in HPRS-24 (serotype II) strain of MDV and in various avian adenoviruses. An additional unique feature of MDV is the presence of long terminal repeat remnant sequences of avian retrovirus reticuloendotheliosis virus. These remnant sequences are derived from the U3-enhancer region through ancestral insertions by reticuloendotheliosis virus proviruses.

Indexed as

Genome, ViralDNA ReplicationDNA, ViralGlycoproteinsHerpesvirus 2, GallidMolecular Sequence DataOpen Reading FramesSequence Analysis, DNASerotypingSpecies SpecificityViral ProteinsVirionVirus ReplicationDNA, ViralGlycoproteinsViral Proteins

Identifiers

PMID10823954
PMCPMC18563
OpenAlexW2109739804

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.