Evidence map›Paper›PMID 10817762›Full record

ArticleGenes & development2000

The zebrafish bonnie and clyde gene encodes a Mix family homeodomain protein that regulates the generation of endodermal precursors.

Y Kikuchi, L A Trinh, J F Reiter, J Alexander, D Yelon, D Y Stainier

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 205 citations in OpenAlex.

  1. Article
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  3. Origin, form and function of extraembryonic structures in teleost fishes.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
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  6. From Stripes to a Beating Heart: Early Cardiac Development in Zebrafish.Journal of cardiovascular development and disease · 2021
    Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Molecular specification of germ layers in vertebrate embryos.Cellular and molecular life sciences : CMLS · 2016
    Review
  14. Article
  15. Article
  16. Article
  17. Odd skipped related 1 is a negative feedback regulator of nodal-induced endoderm development.Developmental dynamics : an official publication of the American Association of Anatomists · 2014
    Article
  18. Article
  19. Primary cilia in pancreatic development and disease.Birth defects research. Part C, Embryo today : reviews · 2014
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Y KikuchiDepartment of Biochemistry and Biophysics, and Physiology Programs in Developmental Biology, Genetics and Human Genetics, University of California, San Francisco 94143-0448, USA.
L A Trinh
J F Reiter
J Alexander
D Yelon
D Y Stainier
University of California, San Francisco · US

Funding

LIGHT-RESPONSIVE GENESR01GM044640 · NIGMS · ROCKEFELLER UNIVERSITY · PI CHUA, NAM-HAI · 1991 to 2011
$5.3M
MOLECULAR GENETICS OF ENDODERM FORMATIONR01DK058181 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STAINIER, DIDIER Y · 2000 to 2007
$2.2M
Light Responsive GenesR56GM044640 · NIGMS · ROCKEFELLER UNIVERSITY · PI CHUA, NAM-HAI · 2007 to 2007
$542k
NIDDK NIH HHS R01 DK058181NIGMS NIH HHS GM-44640
6 · The paper itself

Abstract

Vertebrate endoderm development has recently become the focus of intense investigation. In this report, we first show that the zebrafish bonnie and clyde (bon) gene plays a critical early role in endoderm formation. bon mutants exhibit a profound reduction in the number of sox17-expressing endodermal precursors formed during gastrulation, and, consequently, a profound reduction in gut tissue at later stages. The endodermal precursors that do form in bon mutants, however, appear to differentiate normally indicating that bon is not required at later steps of endoderm development. We further demonstrate that bon encodes a paired-class homeodomain protein of the Mix family that is expressed transiently before and during early gastrulation in both mesodermal and endodermal progenitors. Overexpression of bon can rescue endodermal gene expression and the formation of a gut tube in bon mutants. Analysis of a newly identified mutant allele reveals that a single amino acid substitution in the DNA recognition helix of the homeodomain creates a dominant interfering form of Bon when overexpressed. We also show through loss- and gain-of-function analyses that Bon functions exclusively downstream of cyclops and squint signaling. Together, our data demonstrate that Bon is a critical transcriptional regulator of early endoderm formation.

Indexed as

DNA-Binding ProteinsHigh Mobility Group ProteinsTranscription FactorsXenopus ProteinsZebrafish ProteinsAmino Acid SequenceAnimalsCell DifferentiationEndodermFemaleGastrulaGene Expression Regulation, DevelopmentalGenes, DominantGenes, SuppressorGenetic LinkageHomeodomain ProteinsDNA-Binding ProteinsHigh Mobility Group ProteinsHomeodomain ProteinsIntracellular Signaling Peptides and ProteinsMix1 protein, Xenopusndr1 protein, zebrafishndr2 protein, zebrafishnodal1 protein, XenopusNodal Signaling LigandsProteinsRNA, Messengersox17a protein, Xenopussox17b.1 protein, Xenopussox17 protein, zebrafishSOXF Transcription FactorsTranscription FactorsTransforming Growth Factor betaXenopus ProteinsZebrafish Proteins

Identifiers

PMID10817762
PMCPMC316618
OpenAlexW1920707660

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.