Evidence map›Paper›PMID 10811858›Full record

ArticleThe Journal of experimental medicine2000

Rearrangement of immunoglobulin genes in shark germ cells.

S S Lee, D Fitch, M F Flajnik, E Hsu

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 81 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. The immunoglobulins of cartilaginous fishes.Developmental and comparative immunology · 2021
    Review
  8. Article
  9. A cold-blooded view of adaptive immunity.Nature reviews. Immunology · 2018
    Review
  10. Review
  11. Article
  12. Article
  13. Fish Immunoglobulins.Biology · 2016
    Review
  14. Article
  15. Biased Immunoglobulin Light Chain Gene Usage in the Shark.Journal of immunology (Baltimore, Md. : 1950) · 2015
    Article
  16. Review
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

S S LeeDepartment of Physiology, State University of New York Health Science Center at Brooklyn, Brooklyn, New York 11203, USA.
D Fitch
M F Flajnik
E Hsu
State University of New York · USNew York University · USUniversity of Maryland, Baltimore · US

Funding

EVOLUTION OF THE MAJOR HISTOCOMPATIBILITY COMPLEXR01RR006603 · NCRR · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI FLAJNIK, MARTIN F · 1991 to 2011
$3.4M
NCRR NIH HHS R01 RR006603NCRR NIH HHS RR06603
6 · The paper itself

Abstract

The variable (V), (diversity [D]), and joining (J) region recombinases (recombination activating genes [RAGs]) can perform like transposases and are thought to have initiated development of the adaptive immune system in early vertebrates by splitting archaic V genes with transposable elements. In cartilaginous fishes, the immunoglobulin (Ig) light chain genes are organized as multiple VJ-constant (C) clusters; some loci are capable of rearrangement while others contain fused VJ. The latter may be key to understanding the evolutionary role of RAG. Are they relics of the archaic genes, or are they results of rearrangement in germ cells? Our data suggest that some fused VJ genes are not only recently rearranged, but also resulted from RAG-like activity involving hairpin intermediates. Expression studies show that these, like some other germline-joined Ig sequences, are expressed at significant levels only early in ontogeny. We suggest that a rejoined Ig gene may not merely be a sequence restricting antibody diversity, but is potentially a novel receptor no longer tied to somatic RAG expression and rearrangement. From the combined data, we arrived at the unexpected conclusion that, in some vertebrates, RAG is still an active force in changing the genome.

Indexed as

Gene RearrangementGenes, ImmunoglobulinAmino Acid SequenceAnimalsBase SequenceDNADNA PrimersEvolution, MolecularFemaleGerm CellsMaleMolecular Sequence DataPhylogenyRecombination, GeneticSequence Homology, Amino AcidSequence Homology, Nucleic AcidDNADNA Primers

Identifiers

PMID10811858
PMCPMC2193156
OpenAlexW2115982185

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.