Evidence map›Paper›PMID 10809695›Full record

ArticleJournal of bacteriology2000

In Saccharomyces cerevisiae, expression of arginine catabolic genes CAR1 and CAR2 in response to exogenous nitrogen availability is mediated by the Ume6 (CargRI)-Sin3 (CargRII)-Rpd3 (CargRIII) complex.

F Messenguy, F Vierendeels, B Scherens, E Dubois

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In one paragraph

Article in Journal of bacteriology, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 37 citations in OpenAlex.

  1. Review
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  13. How versatile are inositol phosphate kinases?The Biochemical journal · 2004
    Review
  14. Article
  15. Article
  16. The Ume6 regulon coordinates metabolic and meiotic gene expression in yeast.Proceedings of the National Academy of Sciences of the United States of America · 2002
    Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

F MessenguyInstitut de Recherches Microbiologiques J. M. Wiame and Laboratoire de Microbiologie de l'Université Libre de Bruxelles, 1070 Brussels, Belgium. Fanarg@resulb.ulb.ac.be
F Vierendeels
B Scherens
E Dubois
Université Libre de Bruxelles · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The products of three genes named CARGRI, CARGRII, and CARGRIII were shown to repress the expression of CAR1 and CAR2 genes, involved in arginine catabolism. CARGRI is identical to UME6 and encodes a regulator of early meiotic genes. In this work we identify CARGRII as SIN3 and CARGRIII as RPD3. The associated gene products are components of a high-molecular-weight complex with histone deacetylase activity and are recruited by Ume6 to promoters containing a URS1 sequence. Sap30, another component of this complex, is also required to repress CAR1 expression. This histone deacetylase complex prevents the synthesis of the two arginine catabolic enzymes, arginase (CAR1) and ornithine transaminase (CAR2), as long as exogenous nitrogen is available. Upon nitrogen depletion, repression at URS1 is released and Ume6 interacts with ArgRI and ArgRII, two proteins involved in arginine-dependent activation of CAR1 and CAR2, leading to high levels of the two catabolic enzymes despite a low cytosolic arginine pool. Our data also show that the deletion of the UME6 gene impairs cell growth more strongly than the deletion of the SIN3 or RPD3 gene, especially in the Sigma1278b background.

Indexed as

Genes, FungalSaccharomyces cerevisiae ProteinsArginaseArginineBacterial ProteinsDNA-Binding ProteinsEnzyme InductionFungal ProteinsGene Expression Regulation, BacterialHistone DeacetylasesMembrane ProteinsMinichromosome Maintenance 1 ProteinNitrogenOrnithine-Oxo-Acid TransaminaseProtein BindingRepressor ProteinsArginaseArginineArgR protein, BacteriaBacterial ProteinsCAR1 protein, S cerevisiaeDNA-Binding ProteinsFungal ProteinsHistone DeacetylasesMembrane ProteinsMinichromosome Maintenance 1 ProteinNitrogenOrnithine-Oxo-Acid TransaminaseRepressor ProteinsRPD3 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsSAP30 protein, S cerevisiaeSIN3 protein, S cerevisiaeTranscription FactorsUME6 protein, S cerevisiae

Identifiers

PMID10809695
PMCPMC94502
OpenAlexW2155958570

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.