Evidence map›Paper›PMID 10799608›Full record

ArticleJournal of virology2000

Mutation of a conserved residue (D123) required for oligomerization of human immunodeficiency virus type 1 Nef protein abolishes interaction with human thioesterase and results in impairment of Nef biological functions.

L X Liu, N Heveker, O T Fackler, S Arold, S Le Gall, K Janvier, B M Peterlin, C Dumas, O Schwartz, S Benichou and 1 more

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 102 citations in OpenAlex.

  1. Article
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  6. Structural basis of CD4 downregulation by HIV-1 Nef.Nature structural & molecular biology · 2020
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  17. Small molecule inhibitors of the HIV-1 virulence factor, Nef.Drug discovery today. Technologies · 2013
    Review
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 7 institutions in 2 countries.

L X LiuInstitut Cochin de Génétique Moléculaire, INSERM U 529 Université Paris V, 75014 Paris, France.
N Heveker
O T Fackler
S Arold
S Le Gall
K Janvier
B M Peterlin
C Dumas
O Schwartz
S Benichou
R Benarous
Centre de Biologie Structurale · FRHoward Hughes Medical Institute · USInserm · FRUniversité Paris Cité · FRCentre National de la Recherche Scientifique · FRInstitut Cochin · FRInstitut Pasteur · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nef is a myristoylated protein of 27 to 35 kDa that is conserved in primate lentiviruses. In vivo, Nef is required for high viral load and full pathological effects. In vitro, Nef has at least four activities: induction of CD4 and major histocompatibility complex (MHC) class I downregulation, enhancement of viral infectivity, and alteration of T-cell activation pathways. We previously reported that the Nef protein from human immunodeficiency virus type 1 interacts with a novel human thioesterase (hTE). In the present study, by mutational analysis, we identified a region of the Nef core, extending from the residues D108 to W124, that is involved both in Nef-hTE interaction and in Nef-induced CD4 downregulation. This region of Nef is located on the oligomer interface and is in close proximity to the putative CD4 binding site. One of the mutants carrying a mutation in this region, targeted to the conserved residue D123, was also found to be defective in two other functions of Nef, MHC class I downmodulation and enhancement of viral infectivity. Furthermore, mutation of this residue affected the ability of Nef to form dimers, suggesting that the oligomerization of Nef may be critical for its multiple functions.

Indexed as

Conserved SequenceAmino Acid SequenceCD4 AntigensCell MembraneDimerizationDown-RegulationGene Products, nefHeLa CellsHIV-1HLA-A2 AntigenHumansMolecular Sequence DataMutagenesis, Site-Directednef Gene Products, Human Immunodeficiency VirusOligopeptidesPalmitoyl-CoA HydrolaseACOT8 protein, humanCD4 AntigensGene Products, nefHLA-A2 Antigennef Gene Products, Human Immunodeficiency VirusOligopeptidesPalmitoyl-CoA HydrolaseThiolester Hydrolases

Identifiers

PMID10799608
PMCPMC110886
OpenAlexW2118166366

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.