Evidence map›Paper›PMID 10790401›Full record

ArticleGenetics2000

Evidence for recent invasion of the medaka fish genome by the Tol2 transposable element.

A Koga, A Shimada, A Shima, M Sakaizumi, H Tachida, H Hori

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
  2. Article
  3. Mobile Elements in Ray-Finned Fish Genomes.Life (Basel, Switzerland) · 2020
    Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Repetitive elements in genomes of parasitic protozoa.Microbiology and molecular biology reviews : MMBR · 2003
    Review
  9. Article
  10. Article
  11. Article
  12. Fishing for answers with transposons.Marine biotechnology (New York, N.Y.)
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

A KogaDivision of Biological Sciences, Graduate School of Science, Nagoya University, Nagoya 464-8602, Japan.
A Shimada
A Shima
M Sakaizumi
H Tachida
H Hori
Nagoya University · JPThe University of Tokyo · JPKyushu University · JPNiigata University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tol2 is a transposable element of the terminal-inverted-repeat class, residing in the genome of the medaka fish Oryzias latipes. The genus Oryzias contains more than 10 species for which phylogenetic relationships have previously been estimated. To infer the history of Tol2 in this genus we performed genomic Southern blots and PCR analyses of 10 of the species. It was revealed that Tol2 occurs in 2 of the 10 species (O. curvinotus and O. latipes) and that the length and the restriction map structure of Tol2 are identical in the two cases. Further, sequencing analysis revealed an extremely low level of divergence compared with that in a nuclear gene. These results suggest recent incorporation of Tol2 into one or both of the two species, implying horizontal transfer of Tol2 from one species to the other or into them both from a common source.

Indexed as

DNA Transposable ElementsTerminal Repeat SequencesAnimalsBase SequenceFemaleGenetic VariationMaleMolecular Sequence DataMonophenol MonooxygenaseMutagenesis, InsertionalOryziasSequence Analysis, DNADNA Transposable ElementsMonophenol Monooxygenase

Identifiers

PMID10790401
PMCPMC1461052
OpenAlexW1827689507

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.