Evidence map›Paper›PMID 10781561›Full record

ArticleJournal of bacteriology2000

Gene rearrangements in the vsa locus of Mycoplasma pulmonis.

X Shen, J Gumulak, H Yu, C T French, N Zou, K Dybvig

Abstract read
In one paragraph

Article in Journal of bacteriology, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed.

  1. Review
  2. Frontiers in molecular biosciences · 2020
    Article
  3. Molecular Mechanisms ofJournal of bacteriology · 2019
    Article
  4. Phase Variation ofMicrobiology spectrum · 2019
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Mycoplasma polysaccharide protects against complement.Microbiology (Reading, England) · 2012
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

X ShenDepartment of Comparative Medicine, University of Alabama at Birmingham, Birmingham, Alabama 35294-0019, USA.
J Gumulak
H Yu
C T French
N Zou
K Dybvig

Funding

XRAY CRYSTALLOGRAPHYP30CA013148 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI MICHAEL JAMES BERTRAM · 1985 to 2026
$165.9M
MOLECULAR AND CELLULAR MICROBIAL PATHOGENESIST32AI007041 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI BRILES, DAVID E · 1985 to 2008
$1.6M
Antigenic Variation in MycoplasmasR21AI041113 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI DYBVIG, KEVIN F · 2004 to 2004
$337k
ANTIGENIC VARIATION IN MYCOPLASMASR01AI041113 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI DYBVIG, KEVIN F · 1997 to 2000
$200k
NCI NIH HHS 5P50CA13148NCI NIH HHS P30 CA013148NIAID NIH HHS AI07041NIAID NIH HHS AI41113NIAID NIH HHS R01 AI041113NIAID NIH HHS R21 AI041113NIAID NIH HHS T32 AI007041
6 · The paper itself

Abstract

The vsa genes of Mycoplasma pulmonis encode the V-1 lipoproteins. Most V-1 proteins contain repetitive domains and are thought to be involved in mycoplasma-host cell interactions. Previously, we have reported the isolation and characterization of six vsa genes comprising a 10-kb region of the genome of M. pulmonis strain KD735-15. In the current study, vsa-specific probes were used to clone several fragments from a genomic library of KD735-15 DNA and assemble a single 20-kb contig containing 11 vsa genes. The middle region of the vsa locus contains a large open reading frame (ORF) that is not a vsa gene and has undergone an internal deletion in some strains. The ORF is predicted to encode a membrane protein that may have a role in disease pathogenesis. To examine vsa genes in a strain of M. pulmonis that is unrelated to KD735-15, strain CT was studied. Through Southern hybridization and genomic cloning analyses, CT was found to possess homologs of the KD735-15 vsaA, -C, -E, and -F genes and two unique genes (vsaG and vsaH) that were not found in KD735-15. High-frequency, site-specific DNA inversions serve to regulate the phase-variable production of individual V-1 proteins. As a result of the sequence analysis of vsa recombination products, a model in which DNA inversion arises from strand exchange involving at least six nucleotides of the vrs box is proposed.

Indexed as

Gene RearrangementGenes, BacterialBacterial ProteinsBase SequenceDNA, BacterialLipoproteinsMolecular Sequence DataMycoplasmaRecombination, GeneticBacterial ProteinsDNA, BacterialLipoproteins

Identifiers

PMID10781561
PMCPMC102001

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.