Evidence map›Paper›PMID 10762542›Full record

ArticleAmerican journal of human genetics2000

Localization of the Fanconi anemia complementation group D gene to a 200-kb region on chromosome 3p25.3.

J A Hejna, C D Timmers, C Reifsteck, D A Bruun, L W Lucas, P M Jakobs, S Toth-Fejel, N Unsworth, S L Clemens, D K Garcia and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 35 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Molecular pathogenesis of fanconi anemia.International journal of hematology · 2002
    Review
  8. Review
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 1 country.

J A HejnaDepartment of Molecular and Medical Genetics, Oregon Health Sciences University, Portland, OR 97201, USA.
C D Timmers
C Reifsteck
D A Bruun
L W Lucas
P M Jakobs
S Toth-Fejel
N Unsworth
S L Clemens
D K Garcia
S L Naylor
M J Thayer
S B Olson
M Grompe
R E Moses
Oregon Health & Science University · USThe University of Texas Health Science Center at San Antonio · US

Funding

Xenograft CoreP01HL048546 · NHLBI · OREGON HEALTH & SCIENCE UNIVERSITY · PI GROMPE, MARKUS · 1994 to 2020
$36.4M
ISOLATION OF TUMOR SUPPRESSOR GENE ON CHROMOSOME 3PR01CA056626 · NCI · UNIVERSITY OF TEXAS HLTH SCI CTR SAN ANT · PI NAYLOR, SUSAN L · 1994 to 2001
$544k
YAG MAPPING OF STS MARKERS ON CHROMOSOME 3P01HG000470 · NHGRI · UNIVERSITY OF TEXAS HLTH SCI CTR SAN ANT · PI NAYLOR, SUSAN L · 1992 to 1997
–
NCI NIH HHS CA56626NHGRI NIH HHS HG00470NHLBI NIH HHS 1PO1HL48546
6 · The paper itself

Abstract

Fanconi anemia (FA) is a rare autosomal recessive disease manifested by bone-marrow failure and an elevated incidence of cancer. Cells taken from patients exhibit spontaneous chromosomal breaks and rearrangements. These breaks and rearrangements are greatly elevated by treatment of FA cells with the use of DNA cross-linking agents. The FA complementation group D gene (FANCD) has previously been localized to chromosome 3p22-26, by use of microcell-mediated chromosome transfer. Here we describe the use of noncomplemented microcell hybrids to identify small overlapping deletions that narrow the FANCD critical region. A 1.2-Mb bacterial-artificial-chromosome (BAC)/P1 contig was constructed, bounded by the marker D3S3691 distally and by the gene ATP2B2 proximally. The contig contains at least 36 genes, including the oxytocin receptor (OXTR), hOGG1, the von Hippel-Lindau tumor-suppressor gene (VHL), and IRAK-2. Both hOGG1 and IRAK-2 were excluded as candidates for FANCD. BACs were then used as probes for FISH analyses, to map the extent of the deletions in four of the noncomplemented microcell hybrid cell lines. A narrow region of common overlapping deletions limits the FANCD critical region to approximately 200 kb. The three candidate genes in this region are TIGR-A004X28, SGC34603, and AA609512.

Indexed as

Chromosome DeletionBlotting, SouthernCell LineChromosome BreakageChromosomes, Human, Pair 3Contig MappingDNA, ComplementaryDNA-Formamidopyrimidine GlycosylaseExpressed Sequence TagsFanconi AnemiaGenetic Complementation TestGenetic LinkageGenetic MarkersHumansHybrid CellsIn Situ Hybridization, FluorescenceDNA, ComplementaryDNA-Formamidopyrimidine GlycosylaseGenetic MarkersInterleukin-1 Receptor-Associated KinasesN-Glycosyl HydrolasesProtein Kinases

Identifiers

PMID10762542
PMCPMC1378015
OpenAlexW1969339989

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.