ArticleProceedings of the National Academy of Sciences of the United States of America2000
Genome organization in dicots: genome duplication in Arabidopsis and synteny between soybean and Arabidopsis.
Article in Proceedings of the National Academy of Sciences of the United States of America, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 102 papers.
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102 citing papers in PubMed.
- Dissecting the cellular architecture and genetic circuitry of the soybean seed.Proceedings of the National Academy of Sciences of the United States of America · 2025Article
- Genome-Wide Identification and Evolution of Receptor-Like Kinases (RLKs) and Receptor like Proteins (RLPs) inBiology · 2020Article
- Conservation and Divergence in the Meiocyte sRNAomes of Arabidopsis, Soybean, and Cucumber.Plant physiology · 2020Article
- Article
- Whole Genome Analysis of Cyclin Dependent Kinase (International journal of molecular sciences · 2018Article
- Similarity between soybean andProceedings of the National Academy of Sciences of the United States of America · 2017Article
- Mapping and identification of a potential candidate gene for a novel maturity locus, E10, in soybean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
- Association analysis for detecting significant single nucleotide polymorphisms for phosphorus-deficiency tolerance at the seedling stage in soybean [Glycine max (L) Merr].Breeding science · 2016Article
- Putative interchromosomal rearrangements in the hexaploid wheat (Triticum aestivum L.) genotype 'Chinese Spring' revealed by gene locations on homoeologous chromosomes.BMC evolutionary biology · 2015Article
- Integrated syntenic and phylogenomic analyses reveal an ancient genome duplication in monocots.The Plant cell · 2014Article
- Detecting and locating whole genome duplications on a phylogeny: a probabilistic approach.Molecular biology and evolution · 2014Article
- Genome-wide analysis of the cyclin gene family in tomato.International journal of molecular sciences · 2013Article
- Comparative inference of duplicated genes produced by polyploidization in soybean genome.International journal of genomics · 2013Article
- Development of a 10,000 locus genetic map of the sunflower genome based on multiple crosses.G3 (Bethesda, Md.) · 2012Article
- Genome organization and characteristics of soybean microRNAs.BMC genomics · 2012Article
- Comparative mapping, genomic structure, and expression analysis of eight pseudo-response regulator genes in Brassica rapa.Molecular genetics and genomics : MGG · 2012Article
- Evolutionary Analysis of Sequence Divergence and Diversity of Duplicate Genes in Aspergillus fumigatus.Evolutionary bioinformatics online · 2012Article
- Article
- Analysis of high-identity segmental duplications in the grapevine genome.BMC genomics · 2011Article
- Article
42 more citing papers are in PubMed but not listed here.
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3 authors.
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No grant is acknowledged in the PubMed record.
Abstract
Synteny between soybean and Arabidopsis was studied by using conceptual translations of DNA sequences from loci that map to soybean linkage groups A2, J, and L. Synteny was found between these linkage groups and all four of the Arabidopsis chromosomes, where GenBank contained enough sequence for synteny to be identified confidently. Soybean linkage group A2 (soyA2) and Arabidopsis chromosome I showed significant synteny over almost their entire lengths, with only 2-3 chromosomal rearrangements required to bring the maps into substantial agreement. Smaller blocks of synteny were identified between soyA2 and Arabidopsis chromosomes IV and V (near the RPP5 and RPP8 genes) and between soyA2 and Arabidopsis chromosomes I and V (near the PhyA and PhyC genes). These subchromosomal syntenic regions were themselves homeologous, suggesting that Arabidopsis has undergone a number of segmental duplications or possibly a complete genome duplication during its evolution. Homologies between the homeologous soybean linkage groups J and L and Arabidopsis chromosomes II and IV also revealed evidence of segmental duplication in Arabidopsis. Further support for this hypothesis was provided by the observation of very close linkage in Arabidopsis of homologs of soybean Vsp27 and Bng181 (three locations) and purple acid phosphatase-like sequences and homologs of soybean A256 (five locations). Simulations show that the synteny and duplications we report are unlikely to have arisen by chance during our analysis of the homology reports.
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