Evidence map›Paper›PMID 10737784›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2000

Crystal structure of the functional domain of the splicing factor Prp18.

J Jiang, D S Horowitz, R M Xu

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Genome-wide gene expression profiles of the developing mouse hippocampus.Proceedings of the National Academy of Sciences of the United States of America · 2001
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

J JiangW. M. Keck Structural Biology Laboratory, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
D S Horowitz
R M Xu
State University of New York · USUniformed Services University of the Health Sciences · US

Funding

PROTEIN/RNA INTERACTIONS IN SPLICE SITE SELECTIONR01GM055874 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI XU, RUI-MING · 1998 to 2006
$2.4M
BIOCHEMISTRY OF PREMRNA SPLICING FACTORSR01GM057267 · NIGMS · HENRY M. JACKSON FDN FOR THE ADV MIL/MED · PI HOROWITZ, DAVID S · 1999 to 2004
$737k
NIGMS NIH HHS GM55874NIGMS NIH HHS GM57267NIGMS NIH HHS R01 GM055874NIGMS NIH HHS R01 GM057267
6 · The paper itself

Abstract

The splicing factor Prp18 is required for the second step of pre-mRNA splicing. We have isolated and determined the crystal structure of a large fragment of the Saccharomyces cerevisiae Prp18 that lacks the N-terminal 79 amino acids. This fragment, called Prp18Delta79, is fully active in yeast splicing in vitro and includes the sequences of Prp18 that have been evolutionarily conserved. The core structure of Prp18Delta79 is compact and globular, consisting of five alpha-helices that adopt a novel fold that we have designated the five-helix X-bundle. The structure suggests that one face of Prp18 interacts with the splicing factor Slu7, whereas the more evolutionarily conserved amino acids in Prp18 form the opposite face. The most highly conserved region of Prp18, a nearly invariant stretch of 19 aa, forms part of a loop between two alpha-helices and may interact with the U5 small nuclear ribonucleoprotein particles. The structure is consistent with a model in which Prp18 forms a bridge between Slu7 and the U5 small nuclear ribonucleoprotein particles.

Indexed as

Nuclear ProteinsSaccharomyces cerevisiae ProteinsAmino Acid SequenceAnimalsConserved SequenceCrystallography, X-RayFungal ProteinsHumansModels, MolecularMolecular Sequence DataProtein ConformationRibonucleoprotein, U5 Small NuclearRNA, MessengerRNA PrecursorsSaccharomyces cerevisiaeSequence Homology, Amino AcidFungal ProteinsNuclear ProteinsPRP18 protein, S cerevisiaeRibonucleoprotein, U5 Small NuclearRNA, MessengerRNA PrecursorsSaccharomyces cerevisiae Proteins

Identifiers

PMID10737784
PMCPMC16185
OpenAlexW2128689127

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.