Evidence map›Paper›PMID 10710441›Full record

ArticleNucleic acids research2000

Phage display of ScFv peptides recognizing the thymidine(6-4)thymidine photoproduct.

A G Zavala, T Lancaster, J D Groopman, P T Strickland, S Chandrasegaran

Open access · greenAbstract read
In one paragraph

Article in Nucleic acids research, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.6field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 8 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

A G ZavalaDepartment of Environmental Health Sciences, The Johns Hopkins University School of Public Health, 615 North Wolfe Street, Baltimore, MD 21205-2179, USA.
T Lancaster
J D Groopman
P T Strickland
S Chandrasegaran
Johns Hopkins University · US

Funding

PILOT STUDY--ACID FOG, AN EXPERIMENTAL MODELP30ES003819 · NIEHS · JOHNS HOPKINS UNIVERSITY · PI GROOPMAN, JOHN D · 1985 to 2012
$22.6M
Validation and Application of Risk, Biomarkers in Human StudiesP01ES006052 · NIEHS · JOHNS HOPKINS UNIVERSITY · PI GROOPMAN, JOHN D · 1993 to 2012
$22.6M
RECOMBINANT ANTIBODIES ENGINEERED FOR DNA ADDUCTSR01ES007568 · NIEHS · JOHNS HOPKINS UNIVERSITY · PI CHANDRASEGARAN, SRINIVASAN · 1998 to 2000
$232k
RECOMBINANT ANTIBODIES ENGINEERED FOR DNA ADDUCTSR55ES007568 · NIEHS · JOHNS HOPKINS UNIVERSITY · PI CHANDRASEGARAN, SRINIVASAN · 1995 to 1995
–
NIEHS NIH HHS ES06052NIEHS NIH HHS ES 07568NIEHS NIH HHS ES07568NIEHS NIH HHS P01 ES006052NIEHS NIH HHS P30 ES003819
6 · The paper itself

Abstract

Solar ultraviolet (UV) radiation induces DNA photoproducts in skin cells and is the predominant cause of human skin cancers. To understand human susceptibility to skin cancer and to facilitate the development of prevention measures, highly specific reagents to detect and quantitate UV-induced DNA adducts in human skin will be needed. One approach towards this end is the use of monoclonal antibody-based molecular dosimetry methods. To facilitate the development of photoproduct-specific antibody reagents we have: (i) cloned and sequenced a single chain variable fragment (ScFv) gene coding for one such high affinity monoclonal antibody, [alpha]UVssDNA-1 (mAb C3B6), recognizing the thymidine(6-4)thymidine photoproduct; (ii) expressed and displayed the cloned ScFv gene on the surface of phage; (iii) selected functional recombinant phage by panning; (iv) purified the ScFv peptide; (v) shown that the purified ScFv peptide binds to UV-irradiated polythymidylic acid but not unirradiated polythymidylic acid. This is the first demonstration of the use of phage display to select a ScFv recognizing DNA damage. In addition, this is the initial step towards immortalizing the antibody gene for genetic manipulation, structure-function studies and application to human investigations.

Indexed as

DNA DamagePeptide LibraryAmino Acid SequenceAntibodies, MonoclonalBacteriophagesCloning, MolecularDNA AdductsEnzyme-Linked Immunosorbent AssayEscherichia coliImmunoglobulin Variable RegionMolecular Sequence DataPhotochemistryPoly TRecombinant ProteinsSequence Analysis, DNAThymidineAntibodies, MonoclonalDNA AdductsImmunoglobulin Variable RegionPeptide LibraryPoly TRecombinant ProteinsThymidine

Identifiers

PMID10710441
PMCPMC102807
OpenAlexW2157021654

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.