Evidence map›Paper›PMID 10698925›Full record

ArticleThe EMBO journal2000

X-ray structure of MalY from Escherichia coli: a pyridoxal 5'-phosphate-dependent enzyme acting as a modulator in mal gene expression.

T Clausen, A Schlegel, R Peist, E Schneider, C Steegborn, Y S Chang, A Haase, G P Bourenkov, H D Bartunik, W Boos

Open access · greenAbstract read
In one paragraph

Article in The EMBO journal, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 47 citations in OpenAlex.

  1. Review
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  5. Structure of the cystathionine γ-synthase MetB from Mycobacterium ulcerans.Acta crystallographica. Section F, Structural biology and crystallization communications · 2011
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

T ClausenMax-Planck-Institut für Biochemie, Abteilung Strukturforschung, D-82152 Martinsried.
A Schlegel
R Peist
E Schneider
C Steegborn
Y S Chang
A Haase
G P Bourenkov
H D Bartunik
W Boos
University of Konstanz · DECenter for Free-Electron Laser Science · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

MalY represents a bifunctional pyridoxal 5'-phosphate-dependent enzyme acting as a beta-cystathionase and as a repressor of the maltose regulon. Here we present the crystal structures of wild-type and A221V mutant protein. Each subunit of the MalY dimer is composed of a large pyridoxal 5'-phosphate-binding domain and a small domain similar to aminotransferases. The structural alignment with related enzymes identifies residues that are generally responsible for beta-lyase activity and depicts a unique binding mode of the pyridoxal 5'-phosphate correlated with a larger, more flexible substrate-binding pocket. In a screen for MalY mutants with reduced mal repressor properties, mutations occurred in three clusters: I, 83-84; II, 181-189 and III, 215-221, which constitute a clearly distinguished region in the MalY crystal structure far away from the cofactor. The tertiary structure of one of these mutants (A221V) demonstrates that positional rearrangements are indeed restricted to regions I, II and III. Therefore, we propose that a direct protein-protein interaction with MalT, the central transcriptional activator of the maltose system, underlies MalY-dependent repression of the maltose system.

Indexed as

Escherichia coli ProteinsProtein ConformationRepressor ProteinsBacterial ProteinsCrystallography, X-RayCystathionine gamma-LyaseEscherichia coliGene Expression Regulation, BacterialMaltoseStructure-Activity RelationshipBacterial ProteinsCystathionine gamma-LyaseEscherichia coli ProteinsMaltoseMalY protein, E coliRepressor Proteins

Identifiers

PMID10698925
PMCPMC305623
OpenAlexW2028754843

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.