Evidence map›Paper›PMID 10689124›Full record

ArticleHuman immunology2000

HLA class II haplotype associations with inflammatory bowel disease in Jewish (Ashkenazi) and non-Jewish caucasian populations.

E A Trachtenberg, H Yang, E Hayes, M Vinson, C Lin, S R Targan, D Tyan, H Erlich, J I Rotter

Abstract read
In one paragraph

Article in Human immunology, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 92 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Gastrointestinal Manifestations in Patients with Systemic Lupus Erythematosus.Open access rheumatology : research and reviews · 2022
    Review
  5. Article
  6. Review
  7. Article
  8. Review
  9. Review
  10. TNFSF15 is an ethnic-specific IBD gene.Inflammatory bowel diseases · 2007
    Article
  11. Genetics of inflammatory bowel disease: current status and future directions.Canadian journal of gastroenterology = Journal canadien de gastroenterologie · 2006
    Review
  12. Review
  13. Review
  14. Review
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

E A TrachtenbergChildren's Hospital Oakland Research Institute, Oakland, CA, USA. etrachtenberg@mail.cho.org
H Yang
E Hayes
M Vinson
C Lin
S R Targan
D Tyan
H Erlich
J I Rotter
Cedars-Sinai Medical Center · USChildren’s Institute · USGeneTrace Systems (United States) · US

Funding

Using polygenic scores to enhance both variant discovery, and understanding of functional consequences of genetic variation in IBD.P01DK046763 · NIDDK · CEDARS-SINAI MEDICAL CENTER · PI TARGAN, STEPHAN R. · 1992 to 2020
$31.1M
MAPPING THE GENES FOR INFLAMMATORY BOWEL DISEASER01DK054967 · NIDDK · CEDARS-SINAI MEDICAL CENTER · PI YANG, HUIYING · 1999 to 2002
$1.0M
NIDDK NIH HHS DK46763NIDDK NIH HHS DK54967NIDDK NIH HHS P01 DK046763
6 · The paper itself

Abstract

Ulcerative colitis (UC) and Crohn's disease (CD) are the clinical entities comprising idiopathic inflammatory bowel disease (IBD). Previous studies on the association of IBD and human leukocyte antigen (HLA) class II genes suggested a role for HLA in this disease. Here we present HLA class II (DRB1, DQB1, DQA1, DPB1) allele and haplotype distributions determined using the polymerase chain reaction and sequence-specific oligonucleotide probe methods. A total of 578 UC and CD Caucasian patients and controls from Jewish (Ashkenazi) and non-Jewish populations was examined. Our previously reported association of DR1-DQ5 with CD was attributable to DRB1*0103. A dramatic association with IBD and the highly unusual DRB1*0103-DQA1*0501-DQB1*0301 haplotype (OR = 6.6, p = 0.036) was found. The more common DR1 haplotype, DRB1*0103-DQA1*0101-DQB1*0501, was also associated with IBD (OR = 3.1, p = 0.014), a result suggesting that interaction between DR and DQ may determine the extent of disease risk. Our previously reported association of DR2 with UC was attributable to DRB1*1502 (OR = 2.6, p = 0.006). At the DPB1 locus, a significant association of DPB1*0401 with CD was observed for the combined populations (OR = 1.85, p = 0.007). These observations indicate that some class II alleles and haplotypes confer susceptibility to both UC and CD, implying common immunogenetic mechanisms of pathogenesis, while others confer risk to only one of these diseases, and illustrate the value of DNA HLA typing in disease susceptibility analyses.

Indexed as

CaliforniaCase-Control StudiesColitis, UlcerativeCrohn DiseaseFemaleGenetic Predisposition to DiseaseHLA-D AntigensHLA-DP AntigensHLA-DP beta-ChainsHLA-DQ AntigensHLA-DR AntigensHumansInflammatory Bowel DiseasesJewsMaleWhite PeopleHLA-D AntigensHLA-DP AntigensHLA-DPB1 antigenHLA-DP beta-ChainsHLA-DQ AntigensHLA-DR Antigens

Identifiers

PMID10689124
PMCPMC4524574
OpenAlexW2046277159

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.