Evidence map›Paper›PMID 10684923›Full record

ArticleNucleic acids research2000

Intronic GIY-YIG endonuclease gene in the mitochondrial genome of Podospora curvicolla: evidence for mobility.

C Saguez, G Lecellier, F Koll

Abstract read
In one paragraph

Article in Nucleic acids research, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Reevaluation of theGenome research · 2021
    Article
  5. Genes · 2020
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Insertion of a homing endonuclease creates a genes-in-pieces ribonucleotide reductase that retains function.Proceedings of the National Academy of Sciences of the United States of America · 2007
    Article
  12. Review
  13. Related homing endonucleases I-BmoI and I-TevI use different strategies to cleave homologous recognition sites.Proceedings of the National Academy of Sciences of the United States of America · 2001
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

C SaguezCentre de Génétique Moléculaire, CNRS, Avenue de la Terrasse, 91198 Gif Sur Yvette Cedex, France.
G Lecellier
F Koll
Centre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Endonuclease genes encoded in invasive introns are themselves supposed to be mobile elements which, during evolution, have colonized pre-existing introns converting them into invasive elements. This hypothesis is supported by numerous data concerning the LAGLI-DADG subclass of intronic endonucleases. Less is known about the GIY-YIG ORFs which constitute another family of endonucleases. In this paper we describe the presence of one optional GIY-YIG ORF in the second intron of the mitochondrial cytochrome b gene in the fungus Podospora curvicolla. We show that this GIY-YIG ORF is efficiently transferred from an ORF-containing intron to an ORF-less allele. We also show that the products of both the GIY-YIG ORF and the non-canonical LAGLI-DADG-GIY-YIG ORF, which is generated by its integration, have endonuclease activities which recognize and cut the insertion site of the optional sequence. This constitutes the first direct evidence for potential mobility of an intronic GIY-YIG endonuclease. We discuss the role that such a mobile sequence could have played during evolution.

Indexed as

AllelesAmino Acid MotifsAmino Acid SequenceBase SequenceCell FusionCytochrome b GroupDNA, MitochondrialEndonucleasesEvolution, MolecularFungal ProteinsGenes, FungalInterspersed Repetitive SequencesIntronsMitochondriaMolecular Sequence DataMutagenesis, InsertionalCytochrome b GroupDNA, MitochondrialEndonucleasesFungal ProteinsRecombinant Fusion Proteins

Identifiers

PMID10684923
PMCPMC111034
OpenAlexW1989823442

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.