Evidence map›Paper›PMID 10655475›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2000

Rational discovery of novel nuclear hormone receptor antagonists.

M Schapira, B M Raaka, H H Samuels, R Abagyan

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
8.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 110 citations in OpenAlex.

  1. Article
  2. iScience · 2021
    Article
  3. Article
  4. PPARPPAR research · 2016
    Review
  5. Article
  6. Metformin interacts with AMPK through binding to γ subunit.Molecular and cellular biochemistry · 2012
    Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Discovery of antiandrogen activity of nonsteroidal scaffolds of marketed drugs.Proceedings of the National Academy of Sciences of the United States of America · 2007
    Article
  16. Hot spots in prion protein for pathogenic conversion.Proceedings of the National Academy of Sciences of the United States of America · 2007
    Article
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

M SchapiraStructural Biology, Skirball Institute of Biomolecular Medicine, Departments of Medicine and Pharmacology, New York University School of Medicine, 550 First Avenue, New York, NY 10016, USA.
B M Raaka
H H Samuels
R Abagyan
New York University · US

Funding

METABOLIC EFFECTS OF THYROID HORMONE IN CELL CULTURER01DK016636 · NIDDK · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI SAMUELS, HERBERT H · 1986 to 2007
$6.0M
Metabolic Effects of Thyroid HormoneR56DK016636 · NIDDK · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI SAMUELS, HERBERT H · 2009 to 2009
$211k
METABOLIC EFFECTS OF THYROID HORMONER37DK016636 · NIDDK · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI SAMUELS, HERBERT H · 1991 to 1998
–
NIDDK NIH HHS DK16636NIDDK NIH HHS R01 DK016636NIDDK NIH HHS R56 DK016636NIGMS NIH HHS GM5541801
6 · The paper itself

Abstract

Nuclear hormone receptors (NRs) are potential targets for therapeutic approaches to many clinical conditions, including cancer, diabetes, and neurological diseases. The crystal structure of the ligand binding domain of agonist-bound NRs enables the design of compounds with agonist activity. However, with the exception of the human estrogen receptor-alpha, the lack of antagonist-bound "inactive" receptor structures hinders the rational design of receptor antagonists. In this study, we present a strategy for designing such antagonists. We constructed a model of the inactive conformation of human retinoic acid receptor-alpha by using information derived from antagonist-bound estrogen receptor-alpha and applied a computer-based virtual screening algorithm to identify retinoic acid receptor antagonists. Thus, the currently available crystal structures of NRs may be used for the rational design of antagonists, which could lead to the development of novel drugs for a variety of diseases.

Indexed as

Computer SimulationDrug DesignModels, MolecularAlgorithmsBinding SitesCrystallography, X-RayDatabases, FactualDrug Evaluation, PreclinicalEstrogen Receptor alphaFalse Positive ReactionsHeLa CellsHormone AntagonistsHormonesHumansLigandsMonte Carlo MethodEstrogen Receptor alphaHormone AntagonistsHormonesLigandsRARA protein, humanReceptors, Cytoplasmic and NuclearReceptors, EstrogenReceptors, Retinoic AcidRetinoic Acid Receptor alpharetinoic acid receptor betaRetinoic Acid Receptor gamma

Identifiers

PMID10655475
PMCPMC15503
OpenAlexW2029679505

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.