Evidence map›Paper›PMID 10648621›Full record

ArticleMolecular and cellular biology2000

Yeast meiosis-specific protein Hop1 binds to G4 DNA and promotes its formation.

K Muniyappa, S Anuradha, B Byers

Abstract read
In one paragraph

Article in Molecular and cellular biology, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed.

  1. Article
  2. NMR Screen Reveals the Diverse Structural Landscape of a G-Quadruplex Library.Chemistry (Weinheim an der Bergstrasse, Germany) · 2024
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. The Journal of biological chemistry · 2017
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Pch2 is a hexameric ring ATPase that remodels the chromosome axis protein Hop1.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  15. Article
  16. Article
  17. Review
  18. G-quadruplexes-novel mediators of gene function.Journal of cardiovascular translational research · 2011
    Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

K MuniyappaDepartment of Biochemistry, Indian Institute of Science, Bangalore 560012, India.
S Anuradha
B Byers

Funding

MOLECULAR CYTOLOGY OF THE YEAST CELL CYCLER01GM018541 · NIGMS · UNIVERSITY OF WASHINGTON · PI BYERS, BRECK E · 1985 to 2006
$1.5M
MOLECULAR CYTOLOGY OF THE YEAST CELL CYCLER37GM018541 · NIGMS · UNIVERSITY OF WASHINGTON · PI BYERS, BRECK E · 1992 to 2001
$678k
NIGMS NIH HHS GM-18541NIGMS NIH HHS R01 GM018541NIGMS NIH HHS R37 GM018541
6 · The paper itself

Abstract

DNA molecules containing stretches of contiguous guanine residues can assume a stable configuration in which planar quartets of guanine residues joined by Hoogsteen pairing appear in a stacked array. This conformation, called G4 DNA, has been implicated in several aspects of chromosome behavior including immunoglobulin gene rearrangements, promoter activation, and telomere maintenance. Moreover, the ability of the yeast SEP1 gene product to cleave DNA in a G4-DNA-dependent fashion, as well as that of the SGS1 gene product to unwind G4 DNA, has suggested a crucial role for this structure in meiotic synapsis and recombination. Here, we demonstrate that the HOP1 gene product, which plays a crucial role in the formation of synaptonemal complex in Saccharomyces cerevisiae, binds robustly to G4 DNA. The apparent dissociation constant for interaction with G4 DNA is 2 x 10(-10), indicative of binding that is about 1,000-fold stronger than to normal duplex DNA. Oligonucleotides of appropriate sequence bound Hop1 protein maximally if the DNA was first subjected to conditions favoring the formation of G4 DNA. Furthermore, incubation of unfolded oligonucleotides with Hop1 led to their transformation into G4 DNA. Methylation interference experiments confirmed that modifications blocking G4 DNA formation inhibit Hop1 binding. In contrast, neither bacterial RecA proteins that preferentially interact with GT-rich DNA nor histone H1 bound strongly to G4 DNA or induced its formation. These findings implicate specific interactions of Hop1 protein with G4 DNA in the pathway to chromosomal synapsis and recombination in meiosis.

Indexed as

Saccharomyces cerevisiae ProteinsBase SequenceBinding SitesDNA-Binding ProteinsDNA, FungalDNA MethylationDNA PrimersFungal ProteinsHistonesModels, BiologicalMolecular Sequence DataNucleic Acid ConformationProtein BindingRec A RecombinasesSaccharomyces cerevisiaeDNA-Binding ProteinsDNA, FungalDNA PrimersFungal ProteinsHistonesHOP1 protein, S cerevisiaeRec A RecombinasesSaccharomyces cerevisiae Proteins

Identifiers

PMID10648621
PMCPMC85284

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.