ArticleNucleic acids research2000
Structural analysis of DNA sequence: evidence for lateral gene transfer in Thermotoga maritima.
Article in Nucleic acids research, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
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Who cites it
29 citing papers in PubMed, 89 citations in OpenAlex.
- Current Methods for Recombination Detection in Bacteria.International journal of molecular sciences · 2022Review
- Chromosomal Organization and Regulation of Genetic Function inEcoSal Plus · 2020Article
- Evolution of the Stator Elements of Rotary Prokaryote Motors.Journal of bacteriology · 2020Review
- Inferring Orthologs: Open Questions and Perspectives.Genomics insights · 2016Review
- Inferring horizontal gene transfer.PLoS computational biology · 2015Article
- Site-Directed Mutagenesis of a Hyperthermophilic Endoglucanase Cel12B from Thermotoga maritima Based on Rational Design.PloS one · 2015Article
- The structural code of cyanobacterial genomes.Nucleic acids research · 2014Article
- Where does Neisseria acquire foreign DNA from: an examination of the source of genomic and pathogenic islands and the evolution of the Neisseria genus.BMC evolutionary biology · 2013Article
- Periplasmic Binding Proteins in Thermophiles: Characterization and Potential Application of an Arginine-Binding Protein from Thermotoga maritima: A Brief Thermo-Story.Life (Basel, Switzerland) · 2013Review
- Differences in DNA curvature-related sequence periodicity between prokaryotic chromosomes and phages, and relationship to chromosomal prophage content.BMC genomics · 2012Article
- Article
- PerPlot & PerScan: tools for analysis of DNA curvature-related periodicity in genomic nucleotide sequences.Microbial informatics and experimentation · 2011Article
- Comparative analysis of sequence periodicity among prokaryotic genomes points to differences in nucleoid structure and a relationship to gene expression.Journal of bacteriology · 2010Article
- Sequence signatures of nucleosome positioning in Caenorhabditis elegans.Genomics, proteomics & bioinformatics · 2010Article
- ComPhy: prokaryotic composite distance phylogenies inferred from whole-genome gene sets.BMC bioinformatics · 2009Article
- A hybrid technique for the periodicity characterization of genomic sequence data.EURASIP journal on bioinformatics & systems biology · 2009Article
- A novel DNA sequence periodicity decodes nucleosome positioning.Nucleic acids research · 2008Article
- Reliability and applications of statistical methods based on oligonucleotide frequencies in bacterial and archaeal genomes.BMC genomics · 2008Article
- A common topology for bacterial and eukaryotic transcription initiation?EMBO reports · 2007Review
- Insights on the evolution of trehalose biosynthesis.BMC evolutionary biology · 2006Article
Corrections and comments
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Authors and funding
5 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The recently published complete DNA sequence of the bacterium Thermotoga maritima provides evidence, based on protein sequence conservation, for lateral gene transfer between Archaea and Bacteria. We introduce a new method of periodicity analysis of DNA sequences, based on structural parameters, which brings independent evidence for the lateral gene transfer in the genome of T.maritima. The structural analysis relates the Archaea-like DNA sequences to the genome of Pyrococcus horikoshii. Analysis of 24 complete genomic DNA sequences shows different periodicity patterns for organisms of different origin. The typical genomic periodicity for Bacteria is 11 bp whilst it is 10 bp for Archaea. Eukaryotes have more complex spectra but the dominant period in the yeast Saccharomyces cerevisiae is 10.2 bp. These periodicities are most likely reflective of differences in chromatin structure.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.