Evidence map›Paper›PMID 10634317›Full record

ArticleGene expression1999

Far upstream regulatory elements enhance position-independent and uterus-specific expression of the murine alpha1(I) collagen promoter in transgenic mice.

K Krempen, D Grotkopp, K Hall, A Bache, A Gillan, R A Rippe, D A Brenner, M Breindl

Open access · greenAbstract read
In one paragraph

Article in Gene expression, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 62 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Screening for YAP Inhibitors Identifies Statins as Modulators of Fibrosis.American journal of respiratory cell and molecular biology · 2020
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. CCR2 deficiency does not provide sustained improvement of muscular dystrophy in mdx5cv mice.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2017
    Article
  17. Article
  18. The characteristics of activated portal fibroblasts/myofibroblasts in liver fibrosis.Differentiation; research in biological diversity · 2016
    Review
  19. Genetic tools for identifying and manipulating fibroblasts in the mouse.Differentiation; research in biological diversity · 2016
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

K KrempenDepartment of Biology and Molecular Biology Institute, San Diego State University, CA 92182, USA.
D Grotkopp
K Hall
A Bache
A Gillan
R A Rippe
D A Brenner
M Breindl
San Diego State University · US

Funding

MOLECULAR AND CELLULAR PATHOGENESIS IN ALCOHOLISMP50AA011605 · NIAAA · UNIVERSITY OF NORTH CAROLINA CHAPEL HILL · PI CREWS, FULTON T · 1998 to 2002
$4.9M
Collagen Gene Expression During Ethanol-Induced FibrosisR01AA010459 · NIAAA · UNIVERSITY OF NORTH CAROLINA CHAPEL HILL · PI RIPPE, RICHARD A · 2001 to 2005
$1.3M
COLLAGEN GENE REGULATION IN DEVELOPMENT AND DISEASER01AR041909 · NIAMS · SAN DIEGO STATE UNIVERSITY · PI BREINDL, MICHAEL · 1994 to 2002
$714k
COLLAGEN GENE REGULATION DURING ETHANOL INDUCED FIBROSISR29AA010459 · NIAAA · UNIVERSITY OF NORTH CAROLINA CHAPEL HILL · PI RIPPE, RICHARD A · 1996 to 2000
$101k
NIAAA NIH HHS AA10459NIAAA NIH HHS P50 AA011605NIAAA NIH HHS R01 AA010459NIAAA NIH HHS R29 AA010459NIAMS NIH HHS AR41909PHS HHS GB41804
6 · The paper itself

Abstract

The stage- and tissue-specific expression of many eukaryotic genes is regulated by cis-regulatory elements, some of which are located in proximity to the start site of transcription whereas others have been identified at considerable distances. In previous studies we have identified far upstream DNase I-hypersensitive sites in the murine alpha1(I) collagen (Col1a1) gene, which may play a role in the regulation of this abundantly expressed gene. Here we have cloned several of these sites into reporter gene constructs containing the Col1a1 promoter driving the green fluorescent protein (GFP) reporter gene and tested their possible functions in transfection experiments and transgenic mice. In transient and stable transfections none of the hypersensitive sites had a significant effect on Col1a1 promoter activity, indicating that they do not contain a classical transcriptional enhancer. In transgenic animals one element located at -18 to -19.5 kb enhanced the position-independent activity of the linked Col1a1 promoter and may be part of a locus control region. Another element located at -7 to -8 kb specifically enhanced reporter gene expression in the uteri of transgenic mice, suggesting that it contains a novel transcriptional enhancer that may be involved in the regulation of type I collagen expression in tissue remodeling in the uterus during the estrous cycle. Our studies also demonstrate the versatility of the GFP reporter gene for use in transgenic animals because it can be analyzed in live animals, whole mount embryos, histological thin sections, or primary cell cultures, and it can be quantified very sensitively in tissue or cell extracts using a fluorometer.

Indexed as

Promoter Regions, GeneticRegulatory Sequences, Nucleic AcidResponse ElementsAnimalsCollagenFemaleGene Expression RegulationGreen Fluorescent ProteinsLuminescent ProteinsMiceMice, TransgenicTransgenesUterusCollagenGreen Fluorescent ProteinsLuminescent Proteins

Identifiers

PMID10634317
PMCPMC6157370
OpenAlexW2434775463

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.