Evidence map›Paper›PMID 10623737›Full record

ArticleJournal of virology2000

Glial cell-specific regulation of the JC virus early promoter by large T antigen.

H S Kim, N M Goncalves, J W Henson

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

H S KimMolecular Neuro-Oncology Laboratory, Massachusetts General Hospital, Charlestown, Massachusetts 02129, USA.
N M Goncalves
J W Henson
Harvard University · USMassachusetts General Hospital · US

Funding

GLIAL SPECIFIC TRANSCRIPTIONAL REPRESSION IN PMLR01NS035735 · NINDS · MASSACHUSETTS GENERAL HOSPITAL · PI HENSON, JOHN W · 1997 to 1999
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NINDS NIH HHS NS35735
6 · The paper itself

Abstract

Progressive multifocal leukoencephalopathy (PML) is a fatal demyelinating disease that results from an oligodendrocyte infection caused by JC virus. The JC virus early promoter directs cell-specific expression of the viral replication factor large T antigen, and thus transcriptional regulation constitutes a major mechanism of glial tropism in PML. We have previously demonstrated that T antigen controls the JC virus basal promoter in a glial cell-specific manner, since T antigen repressed the JC virus and simian virus 40 (SV40) early promoters in glioma cells but induced strong activation of the JC virus early promoter in nonglial cells. To further analyze these findings, T antigen and nuclear extracts from glial and nonglial cells were used to examine DNase I footprints on the proximal promoter. T-antigen binding to site II was more extensive than expected based on sequence homology with SV40, and nuclear proteins protected several regions of the proximal promoter in a cell-specific manner. Multiple Sp1 binding domains were identified. Site-directed mutagenesis revealed that T-antigen-mediated activation required a TATA box sequence, a pentanucleotide repeat immediately upstream of the TATA box, and an Sp1 binding site downstream of the TATA box. When footprints were obtained with mutant promoters which blocked T-antigen-induced transactivation, no change in T-antigen binding was observed. These results suggest that T antigen activates the JC virus basal promoter in nonglial cells by interaction with the transcription initiation complex.

Indexed as

CCAAT-Enhancer-Binding ProteinsGene Expression Regulation, ViralPromoter Regions, GeneticTranscription FactorsAntigens, Polyomavirus TransformingBase SequenceBinding SitesDNA-Binding ProteinsDNA, ViralHeLa CellsHumansJC VirusMolecular Sequence DataMutagenesisNeurogliaNFI Transcription FactorsAntigens, Polyomavirus TransformingCCAAT-Enhancer-Binding ProteinsDNA-Binding ProteinsDNA, ViralNFI Transcription FactorsNuclear ProteinsSp1 Transcription FactorTranscription FactorsY-Box-Binding Protein 1YBX1 protein, human

Identifiers

PMID10623737
PMCPMC111595
OpenAlexW2160843324

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.