Evidence map›Paper›PMID 10613847›Full record

ArticleGenome research1999

A comparative gene map of the horse (Equus caballus).

A R Caetano, Y L Shiue, L A Lyons, S J O'Brien, T F Laughlin, A T Bowling, J D Murray

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Genome research, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 69 citations in OpenAlex.

  1. Article
  2. Article
  3. Applied equine genetics.Equine veterinary journal · 2014
    Review
  4. Article
  5. The horse genome derby: racing from map to whole genome sequence.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2008
    Review
  6. Multidirectional cross-species painting illuminates the history of karyotypic evolution in Perissodactyla.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2008
    Article
  7. A high-resolution physical map of equine homologs of HSA19 shows divergent evolution compared with other mammals.Mammalian genome : official journal of the International Mammalian Genome Society · 2005
    Article
  8. Polymorphisms in equine immune response genes and their associations with infections.Mammalian genome : official journal of the International Mammalian Genome Society · 2004
    Article
  9. Exceptional conservation of horse-human gene order on X chromosome revealed by high-resolution radiation hybrid mapping.Proceedings of the National Academy of Sciences of the United States of America · 2004
    Article
  10. Refined genome-wide comparative map of the domestic horse, donkey and human based on cross-species chromosome painting: insight into the occasional fertility of mules.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2004
    Article
  11. Article
  12. Mapping of 13 horse genes by fluorescence in-situ hybridization (FISH) and somatic cell hybrid analysis.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2001
    Article
  13. Current awareness.Yeast (Chichester, England) · 2000
    Article
  14. Synteny and regional marker order assignment of 26 type I and microsatellite markers to the horse X- and Y-chromosomes.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2000
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

A R CaetanoVeterinary Genetics Laboratory, University of California Davis, Davis, California 95616-8744, USA.
Y L Shiue
L A Lyons
S J O'Brien
T F Laughlin
A T Bowling
J D Murray
University of California, Davis · USNational Institutes of Health · USEast Tennessee State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A comparative gene map of the horse genome composed of 127 loci was assembled based on the new assignment of 68 equine type I loci and on data published previously. PCR primers based on consensus gene sequences conserved across mammalian species were used to amplify markers for assigning 68 equine type I loci to 27 horse synteny groups established previously with a horse-mouse somatic cell hybrid panel (SCHP, UC Davis). This increased the number of coding genes mapped to the horse genome by over 2-fold and allowed refinements of the comparative mapping data available for this species. In conjunction with 57 previous assignments of type I loci to the horse genome map, these data have allowed us to confirm the assignment of 24 equine synteny groups to their respective chromosomes, to provisionally assign nine synteny groups to chromosomes, and to further refine the genetic composition established with Zoo-FISH of two horse chromosomes. The equine type I markers developed in this study provide an important resource for the future development of the horse linkage and physical genome maps.

Indexed as

Chromosome MappingAnimalsBase SequenceConserved SequenceDNA PrimersGenetic MarkersGenomeHorsesPolymerase Chain ReactionSequence Analysis, DNASex ChromosomesDNA PrimersGenetic Markers

Identifiers

PMID10613847
PMCPMC311003
OpenAlexW2143404452

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.