Evidence map›Paper›PMID 10603421›Full record

ArticleInfection and immunity2000

Identification and cloning of genes from Porphyromonas gingivalis after mutagenesis with a modified Tn4400 transposon from Bacteroides fragilis.

T Chen, H Dong, Y P Tang, M M Dallas, M H Malamy, M J Duncan

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In one paragraph

Article in Infection and immunity, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 24 citations in OpenAlex.

  1. Recasting of Periodontal Diagnosis.Journal of pharmacy & bioallied sciences · 2025
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  12. The Drosophila melanogaster host model.Journal of oral microbiology · 2012
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

T ChenDepartment of Molecular Genetics, The Forsyth Institute, Boston, Massachusetts 02115, USA.
H Dong
Y P Tang
M M Dallas
M H Malamy
M J Duncan
Tufts University · US

Funding

GENETIC SYSTEMS TO STUDY VIRULENCE IN B FRAGILISR01AI019497 · NIAID · TUFTS UNIVERSITY BOSTON · PI MALAMY, MICHAEL H · 1985 to 2008
$2.6M
P GINGIVALIS GENES INVOLVED IN EPITHELIAL ATTACHMENTR01DE010510 · NIDCR · FORSYTH INSTITUTE · PI DUNCAN, MARGARET J · 1996 to 2005
$2.5M
NIAID NIH HHS R01 AI019497NIAID NIH HHS R01AI19497NIDCR NIH HHS R01 DE010510NIDCR NIH HHS R01 DE 10510
6 · The paper itself

Abstract

Porphyromonas gingivalis is a gram-negative, black-pigmented, oral anaerobe strongly associated with adult periodontitis. Previous transposon mutagenesis studies with this organism were based on the Bacteroides transposon Tn4351. Characterization of Tn4351-disrupted genes by cloning has not been an efficient way to analyze large numbers of mutants and is further complicated by the high rate of cointegration of the suicide delivery vector containing Tn4351. In this study, we mutagenized P. gingivalis with a modified version of the Bacteroides fragilis transposon Tn4400. Plasmid pYT646B carrying the transposon was mobilized from Escherichia coli to P. gingivalis ATCC 33277 by conjugation. Both normal and inverse transposition frequencies were similar (3 x 10(-8)). However, the inverse transposon (Tn4400') contains a pBR322 replicon and a beta-lactamase gene; thus, the cloning of disrupted genomic DNAs from inverse transposition mutants was easily accomplished after ligation of genomic fragments and transformation into E. coli. Thousands of transconjugants could be obtained in a single mating experiment, and inverse transposition was random as demonstrated by Southern hybridization. By this procedure the disrupted genes from P. gingivalis pleiotropic mutants were quickly cloned, sequenced, and identified.

Indexed as

Genes, BacterialAdultBacteroides fragilisBase SequenceCloning, MolecularDNA, BacterialDNA PrimersDNA Transposable ElementsEscherichia coliHumansMutagenesis, InsertionalMutationPeriodontitisPhenotypePigmentationPorphyromonas gingivalisDNA, BacterialDNA PrimersDNA Transposable Elements

Identifiers

PMID10603421
PMCPMC97154
OpenAlexW2110178241

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.