ArticleNucleic acids research2000
UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs.
Article in Nucleic acids research, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
28 citing papers in PubMed, 276 citations in OpenAlex.
- Molecular characterization of superoxide dismutase and catalase genes, and the induction of antioxidant genes under the zinc oxide nanoparticle-induced oxidative stress in air-breathing magur catfish (Clarias magur).Fish physiology and biochemistry · 2021Article
- Association of genetic variations in RTN4 3'-UTR with risk for clear cell renal cell carcinoma.Familial cancer · 2018Article
- Ribosome profiling reveals translational regulation of mammalian cells in response to hypoxic stress.BMC genomics · 2017Article
- Identification of elements in human long 3' UTRs that inhibit nonsense-mediated decay.RNA (New York, N.Y.) · 2015Article
- Computational Identification of Post Translational Modification Regulated RNA Binding Protein Motifs.PloS one · 2015Article
- Functional and Structural Consequences of Damaging Single Nucleotide Polymorphisms in Human Prostate Cancer Predisposition Gene RNASEL.BioMed research international · 2015Article
- RBPmap: a web server for mapping binding sites of RNA-binding proteins.Nucleic acids research · 2014Article
- Article
- An alignment-free approach for eukaryotic ITS2 annotation and phylogenetic inference.PloS one · 2011Article
- Transcriptome analysis of synaptoneurosomes identifies neuroplasticity genes overexpressed in incipient Alzheimer's disease.PloS one · 2009Article
- ARED 3.0: the large and diverse AU-rich transcriptome.Nucleic acids research · 2006Article
- Computational analysis of 3'-ends of ESTs shows four classes of alternative polyadenylation in human, mouse, and rat.Genome research · 2005Article
- PCAS--a precomputed proteome annotation database resource.BMC genomics · 2003Article
- Molecular genetics of pathogenic oomycetes.Eukaryotic cell · 2003Review
- Sequence determinants in human polyadenylation site selection.BMC genomics · 2003Article
- Prediction of consensus structural motifs in a family of coregulated RNA sequences.Nucleic acids research · 2002Article
- General utility of the chicken betaB1-crystallin promoter to drive protein expression in lens fiber cells of transgenic mice.Transgenic research · 2002Article
- Transterm: a database of mRNAs and translational control elements.Nucleic acids research · 2002Article
- MitoNuc: a database of nuclear genes coding for mitochondrial proteins. Update 2002.Nucleic acids research · 2002Article
- Identification of alternate polyadenylation sites and analysis of their tissue distribution using EST data.Genome research · 2001Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
7 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The 5' and 3' untranslated regions of eukaryotic mRNAs may play a crucial role in the regulation of gene expression controlling mRNA localization, stability and translational efficiency. For this reason we developed UTRdb, a specialized database of 5' and 3' untranslated sequences of eukaryotic mRNAs cleaned from redundancy. UTRdb entries are enriched with specialized information not present in the primary databases including the presence of nucleotide sequence patterns already demonstrated by experimental analysis to have some functional role. All these patterns have been collected in the UTRsite database so that it is possible to search any input sequence for the presence of annotated functional motifs. Furthermore, UTRdb entries have been annotated for the presence of repetitive elements. All internet resources implemented for retrieval and functional analysis of 5' and 3' untranslated regions of eukaryotic mRNAs are accessible at http://bigarea.area.ba.cnr.it:8000/EmbIT/UTRH ome/
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.