ArticleNucleic acids research2000
The TIGR gene indices: reconstruction and representation of expressed gene sequences.
Article in Nucleic acids research, 2000. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 120 papers.
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120 citing papers in PubMed.
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- A transcriptomic view to wounding response in young Scots pine stems.Scientific reports · 2021Article
- De novo clustering of long reads by gene from transcriptomics data.Nucleic acids research · 2019Article
- Comparative Genomics of Lactobacillus brevis Reveals a Significant Plasmidome Overlap of Brewery and Insect Isolates.Current microbiology · 2019Article
- Predictions of novel Schistosoma mansoni - human protein interactions consistent with experimental data.Scientific reports · 2018Article
- Abscisic-acid-dependent basic leucine zipper (bZIP) transcription factors in plant abiotic stress.Protoplasma · 2017Review
- Developmental Changes in Scots Pine Transcriptome during Heartwood Formation.Plant physiology · 2016Article
- Molecular marker development from transcript sequences and germplasm evaluation for cultivated peanut (Arachis hypogaea L.).Molecular genetics and genomics : MGG · 2016Article
- Heterotrimeric G-proteins in Picea abies and their regulation in response to Heterobasidion annosum s.l. infection.BMC plant biology · 2015Article
- Whole transcriptome analysis with sequencing: methods, challenges and potential solutions.Cellular and molecular life sciences : CMLS · 2015Review
- Extreme Sensory Complexity Encoded in the 10-Megabase Draft Genome Sequence of the Chromatically Acclimating Cyanobacterium Tolypothrix sp. PCC 7601.Genome announcements · 2015Article
- Brassica napus L. cultivars show a broad variability in their morphology, physiology and metabolite levels in response to sulfur limitations and to pathogen attack.Frontiers in plant science · 2015Article
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- Deep proteomics of the Xenopus laevis egg using an mRNA-derived reference database.Current biology : CB · 2014Article
- Bioinformatics and Gene Network Analyses of the Swine Mammary Gland Transcriptome during Late Gestation.Bioinformatics and biology insights · 2013Article
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- Transcriptome-scale homoeolog-specific transcript assemblies of bread wheat.BMC genomics · 2012Article
- In silico identification of known osmotic stress responsive genes from Arabidopsis in soybean and Medicago.Genetics and molecular biology · 2012Article
- A second generation framework for the analysis of microsatellites in expressed sequence tags and the development of EST-SSR markers for a conifer, Cryptomeria japonica.BMC genomics · 2012Article
- EST dataset of pituitary and identification of somatolactin and novel genes in Chinese sturgeon, Acipenser sinensis.Molecular biology reports · 2012Article
60 more citing papers are in PubMed but not listed here.
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5 authors.
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No grant is acknowledged in the PubMed record.
Abstract
Expressed sequence tags (ESTs) have provided a first glimpse of the collection of transcribed sequences in a variety of organisms. However, a careful analysis of this sequence data can provide significant additional functional, structural and evolutionary information. Our analysis of the public EST sequences, available through the TIGR Gene Indices (TGI; http://www.tigr.org/tdb/tdb.html ), is an attempt to identify the genes represented by that data and to provide additional information regarding those genes. Gene Indices are constructed for selected organisms by first clustering, then assembling EST and annotated gene sequences from GenBank. This process produces a set of unique, high-fidelity virtual transcripts, or tentative consensus (TC) sequences. The TC sequences can be used to provide putative genes with functional annotation, to link the transcripts to mapping and genomic sequence data, and to provide links between orthologous and paralogous genes.
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