Evidence map›Paper›PMID 10580473›Full record

ArticleRNA (New York, N.Y.)1999

Translational suppressors and antisuppressors alter the efficiency of the Ty1 programmed translational frameshift.

C L Burck, Y O Chernoff, R Liu, P J Farabaugh, S W Liebman

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.4field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 9 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

C L BurckDepartment of Biological Sciences, University of Illinois at Chicago, 60607, USA.
Y O Chernoff
R Liu
P J Farabaugh
S W Liebman
University of Illinois Chicago · USHarvard University · USUniversity of Maryland, Baltimore County · US

Funding

HOST GENES AFFECTING TYL TRANSPOSITIONR01GM050365 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI LIEBMAN, SUSAN W. · 1994 to 1997
–
NIGMS NIH HHS GM50365
6 · The paper itself

Abstract

Certain viruses, transposons, and cellular genes have evolved specific sequences that induce high levels of specific translational errors. Such "programmed misreading" can result in levels of frameshifting or nonsense codon readthrough that are up to 1,000-fold higher than normal. Here we determine how a number of mutations in yeast affect the programmed misreading used by the yeast Ty retrotransposons. These mutations have previously been shown to affect the general accuracy of translational termination. We find that among four nonsense suppressor ribosomal mutations tested, one (a ribosomal protein mutation) enhanced the efficiency of the Tyl frameshifting, another (an rRNA mutation) reduced frameshifting, and two others (another ribosomal protein mutation and another rRNA mutation) had no effect. Three antisuppressor rRNA mutations all reduced Tyl frameshifting; however the antisuppressor mutation in the ribosomal protein did not show any effect. Among nonribosomal mutations, the allosuppressor protein phosphatase mutation enhanced Tyl frameshifting, whereas the partially inactive prion form of the release factor eRF3 caused a slight decrease, if any effect. A mutant form of the other release factor, eRF1, also had no effect on frameshifting. Our data suggest that Ty frameshifting is under the control of the cellular translational machinery. Surprisingly we find that translational suppressors can affect Ty frameshifting in either direction, whereas antisuppressors have either no effect or cause a decrease.

Indexed as

Frameshifting, RibosomalRetroelementsBase Sequencebeta-GalactosidaseCodonEscherichia coliMutagenesis, InsertionalProtein BiosynthesisSaccharomyces cerevisiaeSuppression, Geneticbeta-GalactosidaseCodonRetroelements

Identifiers

PMID10580473
PMCPMC1369866
OpenAlexW2169006187

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.