Evidence map›Paper›PMID 10580003›Full record

ArticleGenes & development1999

The RING finger/B-box factor TAM-1 and a retinoblastoma-like protein LIN-35 modulate context-dependent gene silencing in Caenorhabditis elegans.

J Hsieh, J Liu, S A Kostas, C Chang, P W Sternberg, A Fire

Open access · diamondAbstract readComparative Study
In one paragraph

Article in Genes & development, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 111 citations in OpenAlex.

  1. A default silencing mechanism restrains stress-induced genes inbioRxiv : the preprint server for biology · 2025
    Article
  2. A cGAL-UAS bipartite expression toolkit forProceedings of the National Academy of Sciences of the United States of America · 2023
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  19. Expression of a single-copy hsp-16.2 reporter predicts life span.The journals of gerontology. Series A, Biological sciences and medical sciences · 2012
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

J HsiehCarnegie Institution of Washington, Department of Embryology, Baltimore, Maryland 21210, USA.
J Liu
S A Kostas
C Chang
P W Sternberg
A Fire
Howard Hughes Medical Institute · USCarnegie Institution for Science · USCalifornia Institute of Technology · US

Funding

PREDOCTORAL TRAINING IN BIOLOGY AND CHEMISTRYT32GM007616 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI STERNBERG, PAUL WARREN · 1985 to 2019
$22.9M
CELLULAR AND MOLECULAR BIOLOGYT32GM007231 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI VAN DOREN, MARK B · 1985 to 2020
$18.4M
GENE REGULATION DURING EARLY DEVELOPMENT OF C. ELEGANSR01GM037706 · NIGMS · STANFORD UNIVERSITY · PI FIRE, ANDREW Z. · 1987 to 2018
$11.0M
GENETIC CONTROL OF NEMATODE VULVAL DEVELOPMENTR01HD023690 · NICHD · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI STERNBERG, PAUL WARREN · 1988 to 1999
–
NICHD NIH HHS HD23690NIGMS NIH HHS GM37706NIGMS NIH HHS R01 GM037706NIGMS NIH HHS T32 GM007231NIGMS NIH HHS T32 GM007616NIGMS NIH HHS T32GM07231
6 · The paper itself

Abstract

Context-dependent gene silencing is used by many organisms to stably modulate gene activity for large chromosomal regions. We have used tandem array transgenes as a model substrate in a screen for Caenorhabditis elegans mutants that affect context-dependent gene silencing in somatic tissues. This screen yielded multiple alleles of a previously uncharacterized gene, designated tam-1 (for tandem-array-modifier). Loss-of-function mutations in tam-1 led to a dramatic reduction in the activity of numerous highly repeated transgenes. These effects were apparently context dependent, as nonrepetitive transgenes retained activity in a tam-1 mutant background. In addition to the dramatic alterations in transgene activity, tam-1 mutants showed modest alterations in expression of a subset of endogenous cellular genes. These effects include genetic interactions that place tam-1 into a group called the class B synMuv genes (for a Synthetic Multivulva phenotype); this family plays a negative role in the regulation of RAS pathway activity in C. elegans. Loss-of-function mutants in other members of the class-B synMuv family, including lin-35, which encodes a protein similar to the tumor suppressor Rb, exhibit a hypersilencing in somatic transgenes similar to that of tam-1 mutants. Molecular analysis reveals that tam-1 encodes a broadly expressed nuclear protein with RING finger and B-box motifs.

Indexed as

Caenorhabditis elegans ProteinsGene SilencingAmino Acid SequenceAnimalsCaenorhabditis elegansCell Cycle ProteinsGenes, rasHelminth ProteinsMolecular Sequence DataMuscle ProteinsNuclear ProteinsPhenotypeRepressor ProteinsSequence AlignmentSignal TransductionTransgenesCaenorhabditis elegans ProteinsCell Cycle ProteinsHelminth Proteinslin-35 protein, C elegansLIN-53 protein, C elegansMuscle ProteinsNuclear ProteinsRepressor ProteinsTAM-1 protein, C elegans

Identifiers

PMID10580003
PMCPMC317160
OpenAlexW2106258135

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.