Evidence map›Paper›PMID 10572117›Full record

ArticleJournal of bacteriology1999

Renaturation of recombinant Treponema pallidum rare outer membrane protein 1 into a trimeric, hydrophobic, and porin-active conformation.

H H Zhang, D R Blanco, M M Exner, E S Shang, C I Champion, M L Phillips, J N Miller, M A Lovett

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Journal of bacteriology, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Molecular basis of bacterial outer membrane permeability revisited.Microbiology and molecular biology reviews : MMBR · 2003
    Review
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

H H ZhangDepartment of Microbiology, Immunology, and Molecular Genetics, School of Medicine, University of California at Los Angeles, Los Angeles, California 90095, USA.
D R Blanco
M M Exner
E S Shang
C I Champion
M L Phillips
J N Miller
M A Lovett
Laboratory of Molecular Genetics · PLUniversity of California, Los Angeles · US

Funding

IMMUNE MECHANISMS IN EXPERIMENTAL SYPHILISR01AI012601 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI LOVETT, MICHAEL A. · 1986 to 2004
$2.3M
RABBIT LYME DISEASE MODEL--PATHOGENESIS AND IMMUNITYR01AI037312 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI MILLER, JAMES NATHANIEL · 1994 to 2003
$1.7M
Immune Mechanisms in Experimental SyphilisR56AI012601 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI LOVETT, MICHAEL A. · 2005 to 2005
$460k
GENETICS OF TREPONEMA PALLIDUM PATHOGENICITYR01AI021352 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI LOVETT, MICHAEL A. · 1985 to 1995
–
NIAID NIH HHS AI-12601NIAID NIH HHS AI-21352NIAID NIH HHS AI-37312NIAID NIH HHS R01 AI012601NIAID NIH HHS R01 AI037312NIAID NIH HHS R56 AI012601
6 · The paper itself

Abstract

We have previously observed that while native Treponema pallidum rare outer membrane protein 1 (Tromp1) is hydrophobic and has porin activity, recombinant forms of Tromp1 do not possess these properties. In this study we show that these properties are determined by conformation and can be replicated by proper renaturation of recombinant Tromp1. Native Tromp1, but not the 47-kDa lipoprotein, extracted from whole organisms by using Triton X-114, was found to lose hydrophobicity after treatment in 8 M urea, indicating that Tromp1's hydrophobicity is conformation dependent. Native Tromp1 was purified from 0.1% Triton X-100 extracts of whole organisms by fast-performance liquid chromatography (FPLC) and shown to have porin activity in planar lipid bilayers. Cross-linking studies of purified native Tromp1 with an 11 A cross-linking agent showed oligomeric forms consistent with dimers and trimers. For renaturation studies of recombinant Tromp1 (rTromp1), a 31,109-Da signal-less construct was expressed in Escherichia coli and purified by FPLC. FPLC-purified rTromp1 was denatured in 8 M urea and then renatured in the presence of 0.5% Zwittergent 3,14 during dialysis to remove the urea. Renatured rTromp1 was passed through a Sephacryl S-300 gel exclusion column previously calibrated with known molecular weight standards. While all nonrenatured rTromp1 eluted from the column at approximately the position of the carbonic anhydrase protein standard (29 kDa), all renatured rTromp1 eluted at the position of the phosphorylase b protein standard (97 kDa), suggesting a trimeric conformation. Trimerization was confirmed by using an 11 A cross-linking agent which showed both dimers and trimers similar to that of native Tromp1. Triton X-114 phase separations showed that all of renatured rTromp1, but none of nonrenatured rTromp1, phase separated exclusively into the hydrophobic detergent phase, similar to native Tromp1. Circular dichroism of nonrenatured and renatured rTromp1 showed a marked loss in alpha-helical secondary structure of renatured rTromp1 compared to the nonrenatured form. Finally, renatured rTromp1, but not the nonrenatured form, showed porin activity in planar liquid bilayers. These results demonstrate that proper folding of rTromp1 results in a trimeric, hydrophobic, and porin-active conformation similar to that of the native protein.

Indexed as

Bacterial ProteinsChromatography, Ion ExchangeCircular DichroismDetergentsOctoxynolPolyethylene GlycolsPorinsProtein ConformationProtein RenaturationProtein Structure, SecondaryRecombinant ProteinsSuccinimidesTreponema pallidumBacterial Proteinsbis(sulfosuccinimidyl)suberateDetergentsNonidet P-40OctoxynolPolyethylene GlycolsPorinsRecombinant ProteinsSuccinimidesTromp1 protein, Treponema pallidum

Identifiers

PMID10572117
PMCPMC103676
OpenAlexW2150828638

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.