Evidence map›Paper›PMID 10570130›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America1999

The structural basis for the oriented assembly of a TBP/TFB/promoter complex.

O Littlefield, Y Korkhin, P B Sigler

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 152 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Archaeal transcription.Transcription · 2020
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Global transcriptional regulator TrmB family members in prokaryotes.Journal of microbiology (Seoul, Korea) · 2016
    Review
  12. Transcription Regulation in Archaea.Journal of bacteriology · 2016
    Review
  13. Review
  14. Article
  15. Structural basis of transcription initiation by RNA polymerase II.Nature reviews. Molecular cell biology · 2015
    Review
  16. Article
  17. Article
  18. Article
  19. The TrmB family: a versatile group of transcriptional regulators in Archaea.Extremophiles : life under extreme conditions · 2014
    Review
  20. Article

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

O LittlefieldDepartment of Molecular Biophysics, Yale University, New Haven CT 06511, USA.
Y Korkhin
P B Sigler
Yale University · USHoward Hughes Medical Institute · US

Funding

STRUCTURAL ANALYSIS OF BIOLOGICAL MACROMOLECULESR01GM015225 · NIGMS · YALE UNIVERSITY · PI RICHARDS, FREDERIC M · 1985 to 1999
–
STRUCTURAL ANALYSIS OF BIOLOGICAL MACROMOLECULESR37GM015225 · NIGMS · YALE UNIVERSITY · PI SIGLER, PAUL B · 1991 to 1998
–
NIGMS NIH HHS GM15225Wellcome Trust
6 · The paper itself

Abstract

Recently the definition of the metazoan RNA polymerase II and archaeal core promoters has been expanded to include a region immediately upstream of the TATA box called the B recognition element (BRE), so named because eukaryal transcription factor TFIIB and its archaeal orthologue TFB interact with the element in a sequence-specific manner. Here we present the 2.4-A crystal structure of archaeal TBP and the C-terminal core of TFB (TFB(c)) in a complex with an extended TATA-box-containing promoter that provides a detailed picture of the stereospecific interactions between the BRE and a helix-turn-helix motif in the C-terminal cyclin repeat of TFB(c). This interaction is important in determining the level of basal transcription and explicitly defines the direction of transcription.

Indexed as

Promoter Regions, GeneticAmino Acid SequenceAnimalsBase SequenceDNA-Binding ProteinsHelix-Turn-Helix MotifsHumansMolecular Sequence DataNucleic Acid ConformationProtein ConformationSulfolobusTATA-Box Binding ProteinTranscription FactorsTranscription Factor TFIIBDNA-Binding ProteinsTATA-Box Binding ProteinTranscription FactorsTranscription Factor TFIIB

Identifiers

PMID10570130
PMCPMC24122
OpenAlexW2070280762

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.