Evidence map›Paper›PMID 10569769›Full record

ArticleInfection and immunity1999

Identification of a novel mycobacterial histone H1 homologue (HupB) as an antigenic target of pANCA monoclonal antibody and serum immunoglobulin A from patients with Crohn's disease.

O Cohavy, G Harth, M Horwitz, M Eggena, C Landers, C Sutton, S R Targan, J Braun

Open access · bronzeAbstract read
In one paragraph

Article in Infection and immunity, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed, 2 pooled it
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 2 syntheses or guidelines pooled it, 99 citations in OpenAlex.

  1. Pooled it
  2. The zoonotic potential of Mycobacterium avium spp. paratuberculosis: a systematic review.Canadian journal of public health = Revue canadienne de sante publique
    Pooled it
  3. Article
  4. Review
  5. Article
  6. Bacteriophage protein Gp46 is a cross-species inhibitor of nucleoid-associated HU proteins.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  7. Article
  8. Article
  9. Article
  10. Current status ofThe Indian journal of medical research · 2016
    Review
  11. Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

O CohavyDepartment of Pathology and Laboratory Medicine, Los Angeles, California 90095, USA.
G Harth
M Horwitz
M Eggena
C Landers
C Sutton
S R Targan
J Braun
Cedars-Sinai Medical Center · USUniversity of California, Los Angeles · US

Funding

Using polygenic scores to enhance both variant discovery, and understanding of functional consequences of genetic variation in IBD.P01DK046763 · NIDDK · CEDARS-SINAI MEDICAL CENTER · PI TARGAN, STEPHAN R. · 1992 to 2020
$31.1M
CLINICAL AND FUNDAMENTAL IMMUNOLOGYT32AI007126 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SAXON, ANDREW · 1985 to 2006
$1.5M
TREATMENT OF METASTATIC CHILDHOOD NEUROBLASTOMAP01CA012800 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI WALL, RANDOLPH · 1985 to 1998
–
IBD: ROLE OF ANTINEUTROPHIL CYTOPLASMIC ANTIBODIESR01DK043026 · NIDDK · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI TARGAN, STEPHAN R. · 1991 to 1993
–
NCI NIH HHS CA12800NIAID NIH HHS T32 AI007126NIDDK NIH HHS DK43026NIDDK NIH HHS DK46763NIDDK NIH HHS P01 DK046763
6 · The paper itself

Abstract

pANCA is a marker antibody associated with inflammatory bowel disease (IBD), including most patients with ulcerative colitis and a subset with Crohn's disease. This study addressed the hypothesis that pANCA reacts with an antigen(s) of microbial agents potentially relevant to IBD pathogenesis. Using a pANCA monoclonal antibody, we have previously identified the C-terminal basic random-coil domain of histone H1 as a pANCA autoantigen. BLAST analysis of the peptide databases revealed H1 epitope homologues in open reading frames of the Mycobacterium tuberculosis genome. Western analysis of extracts from six mycobacterial species directly demonstrated reactivity to a single, conserved approximately 32-kDa protein. Direct protein sequencing, followed by gene cloning, revealed a novel 214-amino-acid protein, an iron-regulated protein recently termed HupB. Sequence analysis demonstrated its homology with the mammalian histone H1 gene family, and recombinant protein expression confirmed its reactivity with the 5-3 pANCA monoclonal antibody. Binding activity of patient serum immunoglobulin G (IgG) to HupB did not correlate with reactivity to histone H1 or pANCA, indicating the complex character of the pANCA antigen. However, anti-HupB IgA was strongly associated with Crohn's disease (P < 0.001). These findings indicate that the 5-3 pANCA monoclonal antibody detects a structural domain recurrent among mycobacteria and cross-reactive with a DNA-binding domain of histone H1. The association of HupB-binding serum IgA with IBD provides new evidence for the association of a mycobacterial species with Crohn's disease.

Indexed as

Bacterial ProteinsAmino Acid SequenceAntibodies, Antineutrophil CytoplasmicAntibodies, MonoclonalAntigens, BacterialCloning, MolecularColitis, UlcerativeCrohn DiseaseDNA-Binding ProteinsHistonesImmunoglobulin AMolecular Sequence DataMycobacterium tuberculosisSequence Homology, Amino AcidAntibodies, Antineutrophil CytoplasmicAntibodies, MonoclonalAntigens, BacterialBacterial ProteinsDNA-Binding ProteinsHistonesH-NS protein, bacteriaImmunoglobulin A

Identifiers

PMID10569769
PMCPMC97061
OpenAlexW1934147355

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.