Evidence map›Paper›PMID 10564280›Full record

ArticleMolecular biology of the cell1999

The interaction and colocalization of Sam68 with the splicing-associated factor YT521-B in nuclear dots is regulated by the Src family kinase p59(fyn).

A M Hartmann, O Nayler, F W Schwaiger, A Obermeier, S Stamm

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 101 papers.

0numbers the graph read from it
0cells of the map it votes in
101citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

101 citing papers in PubMed, 192 citations in OpenAlex.

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  17. The mFrontiers in pharmacology · 2024
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41 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

A M HartmannMax-Planck-Institut of Neurobiology, Max-Planck-Institut of Biochemistry, D-82152 Martinsried, Germany.
O Nayler
F W Schwaiger
A Obermeier
S Stamm
Max Planck Institute of Neurobiology · DEMax Planck Institute of Biochemistry · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Alternative pre-mRNA splicing patterns can change an extracellular stimulus, but the signaling pathways leading to these changes are still poorly characterized. Here, we describe a tyrosine-phosphorylated nuclear protein, YT521-B, and show that it interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68-kDa Src substrate associated during mitosis, Sam68. Northern blot analysis demonstrated ubiquitous expression, but detailed RNA in situ analysis revealed cell type specificity in the brain. YT521-B protein is localized in the nucleoplasm and concentrated in 5-20 large nuclear dots. Deletion analysis demonstrated that the formation of these dots depends on the presence of the amino-terminal glutamic acid-rich domain and the carboxyl-terminal glutamic acid/arginine-rich region. We show that the latter comprises an important protein-protein interaction domain. The Src family kinase p59(fyn)-mediated tyrosine phosphorylation of Sam68 negatively regulates its association with YT521-B, and overexpression of p59(fyn) dissolves nuclear dots containing YT521-B. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner. Together, our data indicate that YT521-B and Sam68 may be part of a signal transduction pathway that influences splice site selection.

Indexed as

Adaptor Proteins, Signal TransducingAmino Acid SequenceAnimalsBrainCell LineCloning, MolecularDNA-Binding ProteinsFungal ProteinsHumansIn Situ HybridizationMicroscopy, FluorescenceMolecular Sequence DataNerve Tissue ProteinsProto-Oncogene ProteinsProto-Oncogene Proteins c-fynRatsAdaptor Proteins, Signal TransducingDNA-Binding ProteinsFungal ProteinsFYN protein, humanFyn protein, ratKHDRBS1 protein, humanNerve Tissue ProteinsProto-Oncogene ProteinsProto-Oncogene Proteins c-fynRNA-Binding ProteinsRNA PrecursorsRNA Splicing FactorsSerine-Arginine Splicing Factorssrc-Family KinasesYTHDC1 protein, humanYthdc1 protein, rat

Identifiers

PMID10564280
PMCPMC25688
OpenAlexW2105420135

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.