Evidence map›Paper›PMID 10559318›Full record

ArticleJournal of virology1999

Human cytomegalovirus UL144 open reading frame: sequence hypervariability in low-passage clinical isolates.

N S Lurain, K S Kapell, D D Huang, J A Short, J Paintsil, E Winkfield, C A Benedict, C F Ware, J W Bremer

Abstract read
In one paragraph

Article in Journal of virology, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed.

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  13. Human cytomegalovirus: taking the strain.Medical microbiology and immunology · 2015
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

N S LurainDepartment of Immunology/Microbiology, Rush Medical College, Rush-Presbyterian-St. Luke's Medical Center, Chicago, Illinois 60612, USA. nlurain@rush.edu
K S Kapell
D D Huang
J A Short
J Paintsil
E Winkfield
C A Benedict
C F Ware
J W Bremer

Funding

WOMEN'S HEALTH AGENDAU01AI038858 · NIAID · SOCIAL AND SCIENTIFIC SYSTEMS, INC. · PI BENSON, CONSTANCE ANN · 1996 to 2008
$157.5M
SPHINGOMYELIN SIGNALING PATHWAY IN FAS-INDUCED APOPTOSISP01CA069381 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI SALVESEN, GUY S. · 1996 to 2009
$16.8M
APOPTOSIS--BASIC MECHANISMS AND DISEASE RELEVANCET32AG000252 · NIA · BURNHAM INSTITUTE FOR MEDICAL RESEARCH · PI SALVESEN, GUY S · 1997 to 2003
$756k
NCI NIH HHS P01 CA069381NCI NIH HHS P01CA69381NIAID NIH HHS AI03368NIAID NIH HHS AI38858NIAID NIH HHS U01 AI038858NIA NIH HHS T32 AG000252
6 · The paper itself

Abstract

Human cytomegalovirus (HCMV) infects a number of organs and cell types in vivo, leading to the hypothesis that HCMV disease and tissue tropism may be related to specific sequence variants. A potential component of HCMV variant strains is the UL144 open reading frame (ORF), which encodes a homologue of the herpesvirus entry mediator, HveA, a member of the tumor necrosis factor receptor superfamily. Sequence analysis of the UL144 ORF in 45 low-passage clinical isolates demonstrated significant strain-specific variability. In individual isolates, nucleotide substitutions occur at up to 21% of the 531 positions, resulting in approximately the same percentage of substitutions in the predicted 176-amino-acid sequence. Phylogenetic analysis indicated that the nucleotide and amino acid sequences diverge into three major groups. For genotypic comparison, the known hypervariable region encompassing the proteolytic cleavage site of the glycoprotein B (gB) gene was also sequenced. All of the isolates could be typed according to the four known gB groups; however, the gB and UL144 sequence groups appeared to be phylogenetically unlinked. The predicted UL144 product homology with tumor necrosis factor receptor family members, along with the unexpectedly high level of sequence variability of the UL144 ORF, suggests that the predicted product may play a role in HCMV infectivity and subsequent host disease.

Indexed as

Amino Acid SequenceBase SequenceCell LineCytomegalovirusCytomegalovirus InfectionsDNA, ViralGene ExpressionHumansMembrane GlycoproteinsMolecular Sequence DataOpen Reading FramesPhylogenySequence Homology, Amino AcidSequence Homology, Nucleic AcidViral Envelope ProteinsViral ProteinsDNA, Viralglycoprotein B, SimplexvirusMembrane GlycoproteinsUL144 ORF protein, Human herpesvirus 5Viral Envelope ProteinsViral Proteins

Identifiers

PMID10559318
PMCPMC113055

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.