Evidence map›Paper›PMID 10545445›Full record

ArticleGenetics1999

A mutation in a methionine tRNA gene suppresses the prp2-1 Ts mutation and causes a pre-mRNA splicing defect in Saccharomyces cerevisiae.

D H Kim, G Edwalds-Gilbert, C Ren, R J Lin

Abstract read
In one paragraph

Article in Genetics, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.1field-weighted citation impact, top 54% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

D H KimDepartment of Molecular Biology, Beckman Research Institute of the City of Hope, Duarte, California 91010, USA.
G Edwalds-Gilbert
C Ren
R J Lin
Beckman Research InstituteThe University of Texas at Austin · US

Funding

FUNCTIONAL SPLICEOSOMES AND EXTRINSIC SPLICING FACTORSR01GM040639 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI LIN, REN-JANG · 1988 to 2006
$2.0M
NIGMS NIH HHS GM-40639
6 · The paper itself

Abstract

The PRP2 gene in Saccharomyces cerevisiae encodes an RNA-dependent ATPase that activates spliceosomes for the first transesterification reaction in pre-mRNA splicing. We have identified a mutation in the elongation methionine tRNA gene EMT1 as a dominant, allele-specific suppressor of the temperature-sensitive prp2-1 mutation. The EMT1-201 mutant suppressed prp2-1 by relieving the splicing block at high temperature. Furthermore, EMT1-201 single mutant cells displayed pre-mRNA splicing and cold-sensitive growth defects at 18 degrees. The mutation in EMT1-201 is located in the anticodon, changing CAT to CAG, which presumably allowed EMT1-201 suppressor tRNA to recognize CUG leucine codons instead of AUG methionine codons. Interestingly, the prp2-1 allele contains a point mutation that changes glycine to aspartate, indicating that EMT1-201 does not act by classical missense suppression. Extra copies of the tRNA(Leu)(UAG) gene rescued the cold sensitivity and in vitro splicing defect of EMT1-201. This study provides the first example in which a mutation in a tRNA gene confers a pre-mRNA processing (prp) phenotype.

Indexed as

RNA SplicingSaccharomyces cerevisiae ProteinsAmino Acid SubstitutionAnticodonDEAD-box RNA HelicasesExonsFungal ProteinsGenes, SuppressorGenetic Complementation TestGenotypeIntronsPoint MutationRNA, FungalRNA, MessengerRNA PrecursorsRNA, Transfer, MetAnticodonDEAD-box RNA HelicasesFungal ProteinsPRP2 protein, S cerevisiaeRNA, FungalRNA, MessengerRNA PrecursorsRNA, Transfer, MetSaccharomyces cerevisiae Proteins

Identifiers

PMID10545445
PMCPMC1460817
OpenAlexW2183913854

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.