Evidence map›Paper›PMID 10542162›Full record

ArticleJournal of bacteriology1999

Molecular evolution of the pathogenicity island of enterotoxigenic Bacteroides fragilis strains.

A A Franco, R K Cheng, G T Chung, S Wu, H B Oh, C L Sears

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 1999. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 90 citations in OpenAlex.

  1. Article
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  3. Review
  4. Article
  5. Article
  6. PathogenicbioRxiv : the preprint server for biology · 2024
    Article
  7. IntestinalmBio · 2024
    Article
  8. Article
  9. Bile acid fitness determinants of abioRxiv : the preprint server for biology · 2023
    Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Review
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

A A FrancoDivisions of Infectious Diseases, Department of Medicine, Johns Hopkins University, School of Medicine, Baltimore, Maryland 21205-2195, USA.
R K Cheng
G T Chung
S Wu
H B Oh
C L Sears
Johns Hopkins University · USNational Institute of Health · AMJohns Hopkins Medicine · USOffice of Infectious Diseases · US

Funding

PHYSIOLOGY AND CLONING OF B FRAGILIS ENTEROTOXINR01DK045496 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI SEARS, CYNTHIA · 1993 to 2010
$3.6M
DIVERSITY OF TOXIGENIC BACTEROIDES FRAGILISF32AI009863 · NIAID · JOHNS HOPKINS UNIVERSITY · PI FRANCO-MORA, AUGUSTO · 1997 to 2000
$41k
NIAID NIH HHS AI09863-01NIAID NIH HHS F32 AI009863NIDDK NIH HHS DK45496NIDDK NIH HHS R01 DK045496
6 · The paper itself

Abstract

Enterotoxigenic Bacteroides fragilis (ETBF) strains, which produce a 20-kDa zinc metalloprotease toxin (BFT), have been associated with diarrheal disease in animals and young children. Studying a collection of ETBF and nontoxigenic B. fragilis (NTBF) strains, we found that bft and a second metalloprotease gene (mpII) are contained in an approximately 6-kb pathogenicity island (termed B. fragilis pathogenicity island or BfPAI) which is present exclusively in all 113 ETBF strains tested (pattern I). Of 191 NTBF strains, 100 (52%) lack both the BfPAI and at least a 12-kb region flanking BfPAI (pattern II), and 82 of 191 NTBF strains (43%) lack the BfPAI but contain the flanking region (pattern III). The nucleotide sequence flanking the left end of the BfPAI revealed a region with the same organization as the mobilization region of the 5-nitroimidazole resistance plasmid pIP417 and the clindamycin resistance plasmid pBFTM10, that is, two mobilization genes (bfmA and bfmB) organized in one operon and a putative origin of transfer (oriT) located in a small, compact region. The region flanking the right end of the BfPAI contains a gene (bfmC) whose predicted protein shares significant identity to the TraD mobilization proteins encoded by plasmids F and R100 from Escherichia coli. Nucleotide sequence analysis of one NTBF pattern III strain (strain I-1345) revealed that bfmB and bfmC are adjacent to each other and separated by a 16-bp GC-rich sequence. Comparison of this sequence with the appropriate sequence of ETBF strain 86-5443-2-2 showed that in this ETBF strain the 16-bp sequence is replaced by the BfPAI. This result defined the BfPAI as being 6,036 bp in length and its precise integration site as being between the bfmB and bfmC stop codons. The G+C content of the BfPAI (35%) and the flanking DNA (47 to 50%) differ greatly from that reported for the B. fragilis chromosome (42%), suggesting that the BfPAI and its flanking region are two distinct genetic elements originating from very different organisms. ETBF strains may have evolved by horizontal transfer of these two genetic elements into a pattern II NTBF strain.

Indexed as

Evolution, MolecularAmino Acid SequenceAnimalsBacteroides fragilisBacteroides InfectionsBase SequenceCattleConjugation, GeneticDNA, BacterialHumansMetalloendopeptidasesMolecular Sequence DataNucleic Acid HybridizationPolymerase Chain ReactionRestriction MappingSequence Analysis, DNADNA, BacterialfragilysinMetalloendopeptidases

Identifiers

PMID10542162
PMCPMC94125
OpenAlexW2129480002

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.